Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01042 ATGGAAGAGGACTCCTCTAAGGACAAAAACTTGCACACCAAGAAAGAGCCACACTATAGAGGAGTCCGGCAGCGGCCGTGGGGAAAGTTCGCCGCCGAAATTCGAGACCCCACTCGGCATGGTGGCCGAGTGTGGCTGGGGACATTCCTCACGGCGGAGGAAGCTGCTAGAGCTTATGACCGTGCTGCCTTTGAAATGAGAGGTGCTTCAGCCGTTCTCAATTTTCCAAAAGAGTATCCTTCATGCTCTTCTATGAGCTCCTCTTCATCATTAACACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTATTCTTCTTCTTCTTCTTCTTCAATGCTTAAACATGATCATGGTAAACAAGTTATTGAGTTTGAGTGCTTGGATGACAAATTGTTAGAGGACCTTCTTGATTTTGATGACCATGCCTACGAGAAAGACTTGCCTAAGAAGTGA 450 0.46 MEEDSSKDKNLHTKKEPHYRGVRQRPWGKFAAEIRDPTRHGGRVWLGTFLTAEEAARAYDRAAFEMRGASAVLNFPKEYPSCSSMSSSSSLTPSSSSSSSSSYSSSSSSSMLKHDHGKQVIEFECLDDKLLEDLLDFDDHAYEKDLPKK 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01042 149 Pfam AP2 domain 17 68 IPR001471 GO:0003700|GO:0006355
Phco6g01042 149 PANTHER DNA-BINDING DOMAIN 12 138 IPR044808 GO:0003700|GO:0009873
Phco6g01042 149 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Phco6g01042 149 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Phco6g01042 149 MobiDBLite consensus disorder prediction 79 115 - -
Phco6g01042 149 MobiDBLite consensus disorder prediction 79 114 - -
Phco6g01042 149 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Phco6g01042 149 Gene3D AP2/ERF domain 18 77 IPR036955 GO:0003700|GO:0006355
Phco6g01042 149 MobiDBLite consensus disorder prediction 1 28 - -
Phco6g01042 149 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Phco6g01042 149 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Phco6g01042 149 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Phco6g01042 149 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01042 Phco-Chr6 10351867 10352316 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g01042 AP2 4.2e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01042 6 10351867 10352316 Phco6g01042 6 10351867 10352316 ECH
Phco6g01042 6 10351867 10352316 Phco2g01844 2 49003255 49003644 PCT