Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00427 ATGCAAACCTTTGAACCCAATTTCACCTTTTGCATCCCAAACACCTTAGAGGCCTCAATTTCACAATCTGATATTTCTATCACTGATTACTTGCTGCCCCAAGAACTTCAATTTCAAGTTCACTTGAGCAATAATAACAACACACAAATGCCTCAGCTCACATCCTTCTCCAAGCCTCCAAGATCCTCAAGTCTAAGCAACCGCAAACCCTCCTTGAAAAACATCAAAATCCCTTCCTTAACCTCTGGTCTTGTGATGCCACAGCACATGGAAACAACAGTAAAAACAAAATTAGGTGAAACCATGTGTAACAACAGCAATCAAGTTTCTTCTTCTTCATCTTTGGATGATGCCAACAATAGCAGAGAGGATAAGCACTATAGAGGGGTTAGGAGAAGGCCGTGGGGGAAGTTTGCTGCAGAAATTCGGGACCCCAATAGAAAAGGCTCAAGGGTGTGGCTTGGAACCTTTGACACAGCCATAGAAGCTGCTAAGGCTTATGACAAAGCTGCTTTCAAGATGAGAGGGAGCAAAGCCATATTGAACTTCCCTTTGGAGGTTGGAGAGTCTGAAGAATCAGTTTCATGCTGCATCAAGGTTGGTGTCAAGAGAGAGAGAGAGGAAGAAAGTGAGTTTAGCAATAAGGATAGTAATAAGGATAGTAATAAGGTCATGAAGAAAGAAGAGCCCTCTCCCAAAGGGATGTGCCCTTTGACTCCATCTTGTTGGAAAGGCTTTTGGGACACTGATGTCATGGGAACCATCTTTAGTGTGCCTCCTTTGTCACCATTATCTCCACTAATGGTTGTTTGA 813 0.4305 MQTFEPNFTFCIPNTLEASISQSDISITDYLLPQELQFQVHLSNNNNTQMPQLTSFSKPPRSSSLSNRKPSLKNIKIPSLTSGLVMPQHMETTVKTKLGETMCNNSNQVSSSSSLDDANNSREDKHYRGVRRRPWGKFAAEIRDPNRKGSRVWLGTFDTAIEAAKAYDKAAFKMRGSKAILNFPLEVGESEESVSCCIKVGVKREREEESEFSNKDSNKDSNKVMKKEEPSPKGMCPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMVV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00427 270 Gene3D AP2/ERF domain 125 186 IPR036955 GO:0003700|GO:0006355
Phco6g00427 270 Pfam AP2 domain 126 176 IPR001471 GO:0003700|GO:0006355
Phco6g00427 270 SUPERFAMILY DNA-binding domain 126 186 IPR016177 GO:0003677
Phco6g00427 270 ProSiteProfiles AP2/ERF domain profile. 126 184 IPR001471 GO:0003700|GO:0006355
Phco6g00427 270 PRINTS Ethylene responsive element binding protein signature 166 186 IPR001471 GO:0003700|GO:0006355
Phco6g00427 270 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Phco6g00427 270 MobiDBLite consensus disorder prediction 207 230 - -
Phco6g00427 270 FunFam Ethylene-responsive transcription factor 2 125 186 - -
Phco6g00427 270 PANTHER DNA-BINDING DOMAIN 73 224 IPR044808 GO:0003700|GO:0009873
Phco6g00427 270 MobiDBLite consensus disorder prediction 103 117 - -
Phco6g00427 270 SMART rav1_2 126 190 IPR001471 GO:0003700|GO:0006355
Phco6g00427 270 MobiDBLite consensus disorder prediction 207 233 - -
Phco6g00427 270 CDD AP2 125 184 IPR001471 GO:0003700|GO:0006355
Phco6g00427 270 MobiDBLite consensus disorder prediction 103 126 - -
Phco6g00427 270 MobiDBLite consensus disorder prediction 49 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g00427 Phco-Chr6 4003509 4004321 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco6g00427 AP2 4.8e-16 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g00427 6 4003509 4004321 Phco6g00427 6 4003509 4004321 ECH
Phco2g01844 2 49003255 49003644 Phco6g00427 6 4003509 4004321 PCT