Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01843 ATGGCACTCAACCACAACCCCTCTTACAAGCTTCTACATCAAGCTCCCCCACCCATCAAAACTCATGCTACCACAATCCATCACACACCACAACCTGCTTCAAATTCTGCTTCTGCTTTACCAATACTTGCCATCATTGTTCCCAGCATCTTTGTCACTGTTTTCATACTCATCACCTACTTAGCTCTTCTCACCAAATTCTTCTCAAACTGGTACCTACTTAACCCCTTGAGATGGATTTTCACCTTACTTATCCCTCAACATGAAGATCAAGACCCCTTCATGGTACTCTCTCCAAGGATGTGGAGCCAAGGACTTGATGAATCTGCCATCAGAGAAATCCCGACACTTCAATTCACAAAAGGAGATCTTGAAAAGAATCAAAGTGTGTATGGCTGCGTGGTTTGTTTGACTGAGTTTCAGGATCATGATATTCTAAAAGTTCTTCCCATCTGCAAACATGCCTTTCACTTTCACTGCATTGATATTTGGCTTCAAACCAATGCCAATTGCCCTCTTTGTAGATCAAACATTGTTTCAGGCAATACACACTGTCCAATGGATCATATCATAGCTCCAAGCTCTTCTCCTCAGGATTCTCAATTGCTCTCTTACGTGGGCAGTGATGAGGATTTTGTTGTCATTGAACTTGGGGGAGGAGAACATGGGGAAGCAATGCCGCAGATGCAACAAGAAAGAAGTGACTCAAGGGAAACAGTAGTAGAGAGTAGATGCCACTCTATTATAAGGAAGTGTCACCATGTTTCCATCATGGGAGACGAGTGCATTGATGTTGGGAAGAAAGATGAGCAGTTTTCTATTCAGCCTATTCGAAGATCTTTCTCAATGGATTCAGCAAACGATAGGCCAGTTTACTTGGATTTTCAAACCATAATGCAACAGAATAATAGGCATCTAAATCAGGCTAGTGCCAATGAAGATTGCAATAGCAGAGATCGAATATCACTCTTTCCATTCCGTTAA 984 0.4207 MALNHNPSYKLLHQAPPPIKTHATTIHHTPQPASNSASALPILAIIVPSIFVTVFILITYLALLTKFFSNWYLLNPLRWIFTLLIPQHEDQDPFMVLSPRMWSQGLDESAIREIPTLQFTKGDLEKNQSVYGCVVCLTEFQDHDILKVLPICKHAFHFHCIDIWLQTNANCPLCRSNIVSGNTHCPMDHIIAPSSSPQDSQLLSYVGSDEDFVVIELGGGEHGEAMPQMQQERSDSRETVVESRCHSIIRKCHHVSIMGDECIDVGKKDEQFSIQPIRRSFSMDSANDRPVYLDFQTIMQQNNRHLNQASANEDCNSRDRISLFPFR 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01843 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 97 181 IPR013083 -
Phco2g01843 327 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Phco2g01843 327 SMART ring_2 133 174 IPR001841 -
Phco2g01843 327 SUPERFAMILY RING/U-box 111 182 - -
Phco2g01843 327 Pfam Ring finger domain 133 175 IPR001841 -
Phco2g01843 327 FunFam E3 ubiquitin-protein ligase ATL6 96 181 - -
Phco2g01843 327 PANTHER RING-H2 FINGER PROTEIN ATL16 18 327 IPR044600 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01843 Phco-Chr2 48999092 49000075 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01843 2 48999092 49000075 Phco2g01843 2 48999092 49000075 ECH
Phco2g01843 2 48999092 49000075 Phco6g00056 6 557920 558876 PCT
Phco6g01040 6 10341307 10342383 Phco2g01843 2 48999092 49000075 PCT