Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g01040 ATGAAGTCATTCCCATATCTCTCATTCACATCTTTGCTTATGGCACTGAACAAGAACCACTCCTACAACAACAAGCTTGGATATGAAGCTCTTCCACCCATCAAAGCCCAGGCTGAAACACTCCAACACCCACCACAACCTGCTTCATCAGACTACGCTTTTCCCATATTTGTTATTGTTGTGCTCAGTGTCTTGGCCACTGTTTTGTTGCTCCTCAGCTACTTCACTTTCTTAACCAGATACTGTTCAAACTGGCGACAAGTTAACCCAATGAGATGGATTTCCCTCCTGAGAATGCGACACAATGAGGATCCCTTCATAGCCTTCTCTCCTGCTATGTGGAACCGAGGGCTTGATGAATCTGTCATCAGAGAAATCCCAACGTTTCAGTTCATAAAAGGAGAAGAAGGTGAGGACCAAAGTGTGTATGGCTGTGTGGTTTGTTTGGCTGAGTTTAAGGAACATGATGTGCTAAAAGTTCTTCCCAACTGCAACCATGCCTTTCATTTGGACTGCATTGATGTGTGGCTTCAGTCCAATTCCAATTGCCCACTTTGCAGATCAAGCATTTCAGGCAACACGCACTGTCCATTGGATCATATCATAGCTCCAAGTTCTTCTCCTCAGGATTCTCAGTTGCTCTCCAATATGGGTAGTGATGAAGATTTTGTGGTTATTGAACTGGGGGGAGAGCCTGGAGCAGTGCTTCCACAGGTGCAACAAGAGAGGAATGACTCAAGGGGAAGCTTGGCACATCGAAACCACTCTACAAGGAAGGTGGAGCACTTGAAACCAAGGAAGTGCCACCATGTTTCCATCATGGGGGATGAGTGTATTGATATCAGAAAAAAAGATGACCAGTTTTTCATTCAGCCAATTAGAAGATCTTTCTCAATGGATTCAGCACATGATAGACAAACTTACTTGGATGCTCAAGTCATAATACAACAAAACAGGCAACAGAATGAGGCTAGTGCTAGTGAGTATTGTAACAGCAGATGTAGAAGAGCATTCTTCCCATTTTGTTATGGAAAGGGATCCAAAAAGGCAGTTCTTTCTTTGGAAAATGATGTTTAG 1077 0.4355 MKSFPYLSFTSLLMALNKNHSYNNKLGYEALPPIKAQAETLQHPPQPASSDYAFPIFVIVVLSVLATVLLLLSYFTFLTRYCSNWRQVNPMRWISLLRMRHNEDPFIAFSPAMWNRGLDESVIREIPTFQFIKGEEGEDQSVYGCVVCLAEFKEHDVLKVLPNCNHAFHLDCIDVWLQSNSNCPLCRSSISGNTHCPLDHIIAPSSSPQDSQLLSNMGSDEDFVVIELGGEPGAVLPQVQQERNDSRGSLAHRNHSTRKVEHLKPRKCHHVSIMGDECIDIRKKDDQFFIQPIRRSFSMDSAHDRQTYLDAQVIIQQNRQQNEASASEYCNSRCRRAFFPFCYGKGSKKAVLSLENDV 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco6g01040 358 FunFam E3 ubiquitin-protein ligase ATL6 109 193 - -
Phco6g01040 358 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 110 193 IPR013083 -
Phco6g01040 358 CDD RING-H2_EL5-like 145 187 - -
Phco6g01040 358 SUPERFAMILY RING/U-box 122 192 - -
Phco6g01040 358 PANTHER RING-H2 FINGER PROTEIN ATL16 33 354 IPR044600 GO:0016567|GO:0016740
Phco6g01040 358 SMART ring_2 145 186 IPR001841 -
Phco6g01040 358 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Phco6g01040 358 Pfam Ring finger domain 145 187 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco6g01040 Phco-Chr6 10341307 10342383 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco6g01040 6 10341307 10342383 Phco6g01040 6 10341307 10342383 ECH
Phco6g01040 6 10341307 10342383 Phco2g01843 2 48999092 49000075 PCT