Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco6g00056 ATGGATTTTGTAAGCCAAAGACACCTACTCCATGTACCAACACAAGCTAATTCACCTTGCACAACTCCTCCAAATCATGATATTACACATCCTTCCGATTCAAATTTTCCCCTCTTAGCAATCCTTGTGGTGGGAATGATGTTTACAACTTTATTCCTTGTGGGCTACTACATGTTAGTTGTCAAGTGCTGCTTCAATTGGAACCATGTTCATCACATAAGACTATTTTCTCTGTCCAGGCAAGGTGAAGATCCATCTGCTGGATACTTAACAGCATCTGAGCCAAGAGGGCTAGAGGAAGCAGTGATTAGGTTGATCCCAGTGATTCATTATAAGCCAGAAGATGGAGACACAATCTGTGGTGATTGTGCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTGGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCAGAAAAATACTCATTGCCCCCTTTGTAGAAGAATTGTGTCCTTGACAAGCCAAGTCCATGTTGACCAACTAAACCTTCTCACTCCAAGATCTTCCCCTCAGGACCAAAGCCAAAACATTGAGAACCATGTTAGTGATGAAGGTTTTGTTGTGATTGATTTGGATGGTGAACTTGATAGAGACCAGAACTTGCAAGGAAGACAAGAGTTACTACCAACCATTGGTGTTTTGTTGGAGCAGAAGATAGCAAAGAAGCTTCATAAGATGAGCAGCTTGGGAGATGAGTGTATTGGCATTAGAGGCAAAGGTGAAAGGGTCTCAGTTGAAGCCATGAGGAGGTCTTTTTCCATGGACTCATCAGTGGATAGAAAGTTTTATGGGGCAATTCAGCAGGCTTTACAACAACAACAACATGAGATTAACACAATTGAAGCCTGTGGTGGCAGTGGTAGAGTCAAGAGATCATTCTTTTCTTTTGGACATGGAAGCTGA 957 0.4201 MDFVSQRHLLHVPTQANSPCTTPPNHDITHPSDSNFPLLAILVVGMMFTTLFLVGYYMLVVKCCFNWNHVHHIRLFSLSRQGEDPSAGYLTASEPRGLEEAVIRLIPVIHYKPEDGDTICGDCAVCLSEFQQDEKLRVIPNCGHVFHIDCIDVWLQKNTHCPLCRRIVSLTSQVHVDQLNLLTPRSSPQDQSQNIENHVSDEGFVVIDLDGELDRDQNLQGRQELLPTIGVLLEQKIAKKLHKMSSLGDECIGIRGKGERVSVEAMRRSFSMDSSVDRKFYGAIQQALQQQQHEINTIEACGGSGRVKRSFFSFGHGS 318
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco6g00056 318 CDD RING-H2_EL5-like 122 165 - -
Phco6g00056 318 Pfam Ring finger domain 122 165 IPR001841 -
Phco6g00056 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 89 169 IPR013083 -
Phco6g00056 318 SMART ring_2 123 164 IPR001841 -
Phco6g00056 318 PANTHER RING-H2 FINGER PROTEIN ATL16 14 317 IPR044600 GO:0016567|GO:0016740
Phco6g00056 318 SUPERFAMILY RING/U-box 122 171 - -
Phco6g00056 318 FunFam E3 ubiquitin-protein ligase ATL6 88 171 - -
Phco6g00056 318 ProSiteProfiles Zinc finger RING-type profile. 123 165 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco6g00056 Phco-Chr6 557920 558876 Dispersed/Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01843 2 48999092 49000075 Phco6g00056 6 557920 558876 PCT