Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g01720 ATGCCTCTTTCTTCTCTCTGCAGCAGGTTCTCGTTCTTGGCCATCTCCCTCTTCTTGTCTCTAACACCCACACTCCAAATCCCCTTGCTAGCCCCAATCTCAAAAGACCCCTCCTCCCAACTCTACACAATCTCCCTCTTCCTCAAAACCCCACTCCAGCATACCACACTCCATCTCGACCTCGGTTCCTCCCTCACCTGGCTCCTCTGCGACTCCACCTACACCTCCTCCTCCTCCCACCAAATCCCCTGCAACACCTCCTTATGCGACTCCTTCCCCTCCAACGCCTGCTCCAACGACACATGCGCCCTCTTCCCGGAAAACCCCCTCACAAGAACCACCCTTCTCGACACTGCCCGCATCGACTCTCTCGCCCTTCCCTCCTACGACGCCTCCTCTCAGAGCCCACTCGTTCTCATTTCCGATTTCATCTTCTCCTGCGGCGTCGCCCATTTGGTTCAAGGCCTCGCCACCAATGTGGCCGGACTAGCCGCTTTGGGCCGGTCCAATTACTCCCTCCCGGCCCAAATAAGCACCGCATTGAGTTCCCCTCATTCTTTCTCTCTCTGCTTGCCCGCTTCATCCAACACAGGCGCAGCTATCTTCGCTTCCACCACCATCTCTTACTTCTTCTCTTCCAAAATTGACCTCACTTACACCCCCCTCATCCTAAACCCCGTCGCCGACACTGTCGTCACCCACAACTCACAACCTTCCGATGAGTATTTCATAAACGTCACCTCCATTAAGATCAACGGCAAGGCTCTTCCAATCAACGGCTCCATCTTAACCGTTGATCAAACCGGCTTCGGTGGGACCAAGATCAGCACTGCGGAGCCCTACACCGTTCTGGAAAGTTCCATTTACAAACTCTTCGTCCAGTTTTTTGTTAACGAATCCTCCGCTTTTAATTTAACGGTGACGGAGGCCGTTGAGCCCTTTGGCGTGTGCTATCCTGCGGGAGACCTCACGGAGACAAGAGTGGGACCCGCGGTTCCAACCGTTGATCTAGTGATGCACAGCGAGGAAGTGTTTTGGAGAATGTTCGGGGGGAATTCGATGGTGAGGATTGAAAAGGAAGGAGTGGATGTGTGGTGTTTGGGTTTCGTAGATGGTGGGAACCGTAGGAGAACGGCGGTTGTGATTGGAGGGCATCAATTGGAGGATAGTGTAGTTGAGTTTGATGTTGACTCAAATAGATTTGGTTTCACCTCATCTCTGTTGCTCCAGGGTGCCAACTGTGCTAATGTCTCTCTCACTAATCTTACCAATCCCATTAATTAG 1284 0.5273 MPLSSLCSRFSFLAISLFLSLTPTLQIPLLAPISKDPSSQLYTISLFLKTPLQHTTLHLDLGSSLTWLLCDSTYTSSSSHQIPCNTSLCDSFPSNACSNDTCALFPENPLTRTTLLDTARIDSLALPSYDASSQSPLVLISDFIFSCGVAHLVQGLATNVAGLAALGRSNYSLPAQISTALSSPHSFSLCLPASSNTGAAIFASTTISYFFSSKIDLTYTPLILNPVADTVVTHNSQPSDEYFINVTSIKINGKALPINGSILTVDQTGFGGTKISTAEPYTVLESSIYKLFVQFFVNESSAFNLTVTEAVEPFGVCYPAGDLTETRVGPAVPTVDLVMHSEEVFWRMFGGNSMVRIEKEGVDVWCLGFVDGGNRRRTAVVIGGHQLEDSVVEFDVDSNRFGFTSSLLLQGANCANVSLTNLTNPIN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g01720 427 Gene3D Acid Proteases 205 421 IPR021109 -
Phco2g01720 427 Gene3D Acid Proteases 24 203 IPR021109 -
Phco2g01720 427 PANTHER ASPARTYL PROTEASE-RELATED 12 418 IPR001461 GO:0004190|GO:0006508
Phco2g01720 427 FunFam Basic 7S globulin 206 421 - -
Phco2g01720 427 ProSiteProfiles Peptidase family A1 domain profile. 42 404 IPR033121 -
Phco2g01720 427 Pfam Xylanase inhibitor C-terminal 241 404 IPR032799 -
Phco2g01720 427 Pfam Xylanase inhibitor N-terminal 42 202 IPR032861 -
Phco2g01720 427 SUPERFAMILY Acid proteases 35 411 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g01720 Phco-Chr2 47512072 47513355 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g01720 2 47512072 47513355 Phco11g01447 11 11082307 11083581 ECH
Phco2g01720 2 47512072 47513355 Phco2g01720 2 47512072 47513355 ECH
Phco2g01720 2 47512072 47513355 Phco6g00930 6 9001507 9002811 PCT