Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02518 ATGGCAGAGCCAATACTAAGGTATGCTGTTGTTACTGGAGCAAATAAAGGGATAGGGTTTGAGACTGTTAAACAGTTGGCCTCAAATGGAGTCAAGGTGGTGCTCACAGCCAGAGATGAGATCAAAGGCCAAGAAGCCATTGGGAGATTGAAAGAGTATGGTCTCTCTGATTTGGTGACTTTTCACCAGCTTGATGTTACTCACTCTGCAAGTATTGATTCTCTAGCTGAGTTTGTAAAGACACAGTTTGGAAAACTTGATATCTTGGTCAACAATGCAGGAATAAATGGTGTCAATCTGGATGAAGTGGAAGAGGGATCAGCATTTAACTGGGAGAAACTCACTCAAACTTATGCGATGGTTGAAGAGTGCCTAACAACAAACTACTATGGCGCAAAGAAAGCAACTGAGGCATTTCTTCCCCTTCTGCAATTATCCAACTCTCCTAGGATTGTGAATGTTTCCTCCCAAGCAGGATTGTTAAAGAACATAGCAAACGAATGGGCTAAAGGGGTGCTTAATGATGCTGAAAATCTTACAGAAGAGAAAATAGACGAGGTGCTCAATGAGTTAATCAAAGACTTCAAAGAAAATTCCTTAGAAACTAAAGGCTGGCCAACCTTCTTGTCTGCCTATGTAGTCTCAAAAGCAGCCATGAATTCATACACAAGAATTCTAGCCAAGAAGCATCCAAACATGTACATAAACAGTGTGTGCCCTGGTTTTGTGAAAACGGACATCAACAAAAGCTCTGGCATCTTATCTATTGAGGAAGGCGCTGCTAGTGTTGTGCGATTGGCACTTTTGCCTGATGGTTCCCCTTCTGGCCTTTTCTATGTTAGGCAAGAATTGTCCAACTTTTAA 864 0.4178 MAEPILRYAVVTGANKGIGFETVKQLASNGVKVVLTARDEIKGQEAIGRLKEYGLSDLVTFHQLDVTHSASIDSLAEFVKTQFGKLDILVNNAGINGVNLDEVEEGSAFNWEKLTQTYAMVEECLTTNYYGAKKATEAFLPLLQLSNSPRIVNVSSQAGLLKNIANEWAKGVLNDAENLTEEKIDEVLNELIKDFKENSLETKGWPTFLSAYVVSKAAMNSYTRILAKKHPNMYINSVCPGFVKTDINKSSGILSIEEGAASVVRLALLPDGSPSGLFYVRQELSNF 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02518 287 CDD carb_red_PTCR-like_SDR_c 7 287 IPR045313 GO:0016616
Phco3g02518 287 FunFam (+)-neomenthol dehydrogenase 2 287 - -
Phco3g02518 287 Gene3D - 7 287 - -
Phco3g02518 287 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Phco3g02518 287 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Phco3g02518 287 PRINTS Glucose/ribitol dehydrogenase family signature 212 231 IPR002347 -
Phco3g02518 287 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Phco3g02518 287 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Phco3g02518 287 Pfam short chain dehydrogenase 8 163 IPR002347 -
Phco3g02518 287 Pfam short chain dehydrogenase 208 250 IPR002347 -
Phco3g02518 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Phco3g02518 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 231 IPR002347 -
Phco3g02518 287 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Phco3g02518 287 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 284 - -
Phco3g02518 287 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 273 IPR036291 -
Phco3g02518 287 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 199 227 IPR020904 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02518 Phco-Chr3 51909794 51911557 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02518 3 51909794 51911557 Phco3g02518 3 51909794 51911557 ECH
Phco1g00819 1 7599522 7601300 Phco3g02518 3 51909794 51911557 PCT