Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g2465 ATGTCTATGTCTGATATTCAATCTCCCAAAGCTGTTGACAAGATTGACCGTGTTGGATCTTTGAAAAAGATACTGAGGGATTCCCTCACAAGGAGGAGTAGGCGTAGCAGTAGTAAGGTTATGTCAGTTGAAATCGAGGATATTCGCGACGCTGATGATTTGAAAGCCGTTGATGAATTCCGTCAGGCTCTTATATTGGATGAATTGCTTCCTGAGAAGCATGATGACTATCATATGCTGCTCAGATTCCTTAGGGCAAGGAAATTTGAAATTGAGAAATCAAAGCAAATGTGGTCAGACATGCTTCAGTGGAGGAAAGAGTTTGGAACTGATACCGTTGTTGAGGATTTTGAATTCGAGGAACTTGAGGAAGTGGTGCAATATTATCCTCATGGAAATCATGGAGTAGATAAAGAAGGAAGACCAATCTACATTGAGAGGTTGGGACAAGTTGATGCCACAAAGTTGCTGCAAGTCACAACAATGGATCGATATGTCAAATACCATGTCAAGGAATTTGAGAGAACATTTGATCTCAAGTTTCCAGCCTGTACCATTGCTGCAAAGAAACACATAGATCAAAGCACCACCATTTTGGATGTGCAAGGAGTGGGGCTTAAGAACTTCAACAAACAAGCCAGAGATCTTATCACACGCCTTCAGAAGATTGATGGTGACAATTATCCTGAAACCTTGAATCGCATGTTCATCATCAATGCAGGTTCTGGATTCAGAATGTTGTGGAACACTGTTAAATCTTTCCTTGACCCAAAGACCACCGCAAAAATCCATGTTCTTGGCAACAAGTACCAAAGCAAGTTGCTTGAAATAATTGATGCAAGTGAATTGCCAGAGTTTTTAGGAGGTACTTGTACCTGCGCTGATCAAGGAGGCTGCATGCGTTCTGATAAGGGTCCATGGAAGGATCCAGAAATAATTAGGATGGTTCAGAATGGCGAACACAAAACCTCAAGGAAAATTGAGGCTCCTATCGTTGAAGAGAAAACTCCTGAGGAAAGCCAGGCTTCCAAAATGGAGGCAGTTTTCACTGCACAATTGTCTACTGTCTATGCCAAGGCCCCTTCTTCAAAAGCATGCAACTATGAGGATTTGGTCCCTATGGCTGATAAAACTGCTTGGCAGATGGTGGAAAAAACTAAGTCATTTGCAGTACCAAAAGCTGAAGTAGAAGCTTTGACGGTGCCTGATTCATGCAAGATTCACGAAAAAGTGAACTCACAGATTTTCACCGGCATGATGGCCTTTGTGATGGGACTCATAACCATGGTGAGAATGACACGAAACATGCCGAAGAGGCTCACTGATGCCAACTTCTACTCAAATTCTGTTTACTCTGGTGGTGACTTTAAAACTGAAGACTCTAATGACCAATTGACCAACCCTACCATTTCGGCTCAAGAGTTTATGACTGTTATGAAGCGCATGGCTGAGTTGGAAGATAAAATGGGCAACATGAACACAACCACTTGCATGCCACCTGAGAAGGAAGAAATGCTTAATGCTGCTATAAGTCGCGCTGATGCTCTTGAGCAAGAACTTATGGCAACCAAGAAGGCTTTGGAGGATTCACTTGCCAAGCAAGAGGAGCTTTCGGCTTACATTAATGAGAAAAAGAAAAAGAAGAAGAAGTTGTTTCAATGGGCATGA 1668 0.4233 MSMSDIQSPKAVDKIDRVGSLKKILRDSLTRRSRRSSSKVMSVEIEDIRDADDLKAVDEFRQALILDELLPEKHDDYHMLLRFLRARKFEIEKSKQMWSDMLQWRKEFGTDTVVEDFEFEELEEVVQYYPHGNHGVDKEGRPIYIERLGQVDATKLLQVTTMDRYVKYHVKEFERTFDLKFPACTIAAKKHIDQSTTILDVQGVGLKNFNKQARDLITRLQKIDGDNYPETLNRMFIINAGSGFRMLWNTVKSFLDPKTTAKIHVLGNKYQSKLLEIIDASELPEFLGGTCTCADQGGCMRSDKGPWKDPEIIRMVQNGEHKTSRKIEAPIVEEKTPEESQASKMEAVFTAQLSTVYAKAPSSKACNYEDLVPMADKTAWQMVEKTKSFAVPKAEVEALTVPDSCKIHEKVNSQIFTGMMAFVMGLITMVRMTRNMPKRLTDANFYSNSVYSGGDFKTEDSNDQLTNPTISAQEFMTVMKRMAELEDKMGNMNTTTCMPPEKEEMLNAAISRADALEQELMATKKALEDSLAKQEELSAYINEKKKKKKKLFQWA* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g2465 555 Gene3D - 109 320 IPR036865 -
Mtr8g2465 555 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 4 551 - -
Mtr8g2465 555 SMART sec14_4 121 292 IPR001251 -
Mtr8g2465 555 PANTHER CELLULAR RETINALDEHYDE BINDING/ALPHA-TOCOPHEROL TRANSPORT, CRAL/TRIO-RELATED 4 551 - -
Mtr8g2465 555 Coils Coil 506 537 - -
Mtr8g2465 555 Pfam CRAL/TRIO, N-terminal domain 72 100 IPR011074 -
Mtr8g2465 555 SMART CRAL_TRIO_N_2 76 101 IPR011074 -
Mtr8g2465 555 CDD SEC14 134 290 IPR001251 -
Mtr8g2465 555 SUPERFAMILY CRAL/TRIO N-terminal domain 51 116 IPR036273 -
Mtr8g2465 555 Pfam CRAL/TRIO domain 128 289 IPR001251 -
Mtr8g2465 555 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 121 295 IPR001251 -
Mtr8g2465 555 PRINTS Cellular retinaldehyde-binding protein signature 79 101 - -
Mtr8g2465 555 PRINTS Cellular retinaldehyde-binding protein signature 248 267 - -
Mtr8g2465 555 PRINTS Cellular retinaldehyde-binding protein signature 281 290 - -
Mtr8g2465 555 Gene3D - 29 108 - -
Mtr8g2465 555 SUPERFAMILY CRAL/TRIO domain 120 317 IPR036865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g2465 Mtr-Chr8 35084005 35089597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g2465 55 286 Acyl Lipid Metabolism Gene Families AT5G47730 27.801 3.54e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g2465 - - gmx:100785716 830.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0822 5 8088987 8094040 Mtr8g2465 8 35084005 35089597 ECH
Mtr8g2465 8 35084005 35089597 Mtr8g2465 8 35084005 35089597 ECH
Mtr4g2126 4 34770586 34774543 Mtr8g2465 8 35084005 35089597 ECH