Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr5g0321 ATGAAACCCTCTTTTTCCATTATTACCATTCAATTTCAATCTCAATCTTCTACTATGGGTATTCGGTTTTCTTCATTTCGATCCAACCTAACCGGTTCAACTTTAGGTGAATTACCGGAAAGTTGCGTCGCTTCAATCATCGGTTACATGGATCCTCCTCAGATCTGTCAACTTGCGACGTTGAATCGTGCTTTTCGTGCTGCTTCTTCTGCTGATTTCGTTTGGGAATCTAAATTGCCGCCAAATTACCATCTTCTCCTCGCCAAAATCTTTCATCATTTTCCTATCAATTTGGGTAAAAGAGACATTTATGCTTCTCTTTGTCGACTTAATACCATTGATGATGGCACCAAGAAAGTTTGGATTGATAGAGCCACGGGTAAGCTTTGTTTGGCTATATCAGCTAACAAGGGACTATCAGTACTTGGGGTTGATGATAGGAGATATTGGAATTATATCATCACTGAAGAATCTAGATTCAATACTGTTGCATACCTTCAGCATACCTGGTGGTTTGAAGTGGACGGGGAAGTTGATTTCCCATTTCCAGCCGGGACATACAGCTTATTCTTCAGAATACATCTAGGGCAAGCCTACAAGAGGTTTGGACGTCGTGTCTGCAACACTGAACATGTTCATGGGTGGGACAAAAAGCCTGTGCGATTCCAACTTTGGACTTCAGATGGGCAATACGTTGCCTCCCAGTGTTTTCTGAAAGGAACTGGCAATTGGACTTTTTACCATGCAGGTGATTTCACAGTTGAGGATGGGAATTCATCAACCAAAGTCAAATTCTCTATGACTCAAATTGATTGCACGCACACTAAAGGTGGTCTGTGTTTGGATTCTGCTTTTATTTACCCAAGCGAATTCAAAAAGAGCAAGTCATTTTTAAACTGCTCCTAA 906 0.4117 MKPSFSIITIQFQSQSSTMGIRFSSFRSNLTGSTLGELPESCVASIIGYMDPPQICQLATLNRAFRAASSADFVWESKLPPNYHLLLAKIFHHFPINLGKRDIYASLCRLNTIDDGTKKVWIDRATGKLCLAISANKGLSVLGVDDRRYWNYIITEESRFNTVAYLQHTWWFEVDGEVDFPFPAGTYSLFFRIHLGQAYKRFGRRVCNTEHVHGWDKKPVRFQLWTSDGQYVASQCFLKGTGNWTFYHAGDFTVEDGNSSTKVKFSMTQIDCTHTKGGLCLDSAFIYPSEFKKSKSFLNCS* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr5g0321 301 Pfam Phloem protein 2 129 288 IPR025886 -
Mtr5g0321 301 PANTHER F-BOX PROTEIN PP2-A12 20 296 - -
Mtr5g0321 301 SUPERFAMILY F-box domain 28 104 IPR036047 GO:0005515
Mtr5g0321 301 ProSiteProfiles F-box domain profile. 32 78 IPR001810 GO:0005515
Mtr5g0321 301 PANTHER F-BOX PROTEIN PP2-A15 20 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr5g0321 Mtr-Chr5 2988419 2991835 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr5g0321 - - gmx:100788842 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr5g0321 5 2988419 2991835 Mtr5g0321 5 2988419 2991835 ECH
Mtr1g3790 1 49443448 49447074 Mtr5g0321 5 2988419 2991835 ECH
Mtr5g0321 5 2988419 2991835 Mtr8g1033 8 12509672 12513247 ECH