Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3790 ATGGGGGCTAGTATTTCTTCAACTGCATCCATAAGAGAAAAAAATAATGAAGAGTCTAATTCTTCATCATCAAAAACTGGTCTTGGTGATATTCCAGAAAGTTGCATCTCTTCCATACTCATGCATCTTGATCCACATGACATATGCAAATTGGCTAGAGTCAACCGTGCTTTTCATAGAGCTTCTTCTGCTGATTTTGTGTGGGAATCAAAGTTACCATCATGCTACAAGTTTCTTGCTAATAAATTTCTTGGTGAAGAAAATCTTTCCACTATGAGTAAGAAAGATGTCTACACAAAACTATGTCAACCTAATCGCTTTGACGGTGGTACCAAAGAAGTTTTATTGGATAAATACAGTGGACAAGTTTGTTTGTTCATGTCATCAAAGTCTTTGAAGATAACAGGAATAGATGATAGAAGATATTGGATTTACATTCCAACTGAGGAATCCAGGTTCAAGAATGTGGCATATCTTCAACAAATGTGGTGGGTTGAAGTAATAGGAGAGCTAGAGTTTGTATTCCCTGTGGGAAGTTACAGCATAACTTTCAGACTCCAATTGGGAAAGTCATCAAAACGATTGGGCAGACGTGTGTGCAACGATGATCAAGTTCATGGCTGGGACATCAAGCCCGTTAGATTCCAACTCTCTACATCGGACGGTCAGCGTTCGATCTCAGAGTGTTACTTGCATGAGCCAGGGCAATGGGCTTATTACCATGTTGGAGATTTCATGGTTACAAAGCCCAATAAGCCCATAAAAATCAAGTTTTCTTTGGCTCAAATTGATTGTACTCATACCAAAGGCGGCCTCTGCATAGATAGTGCAATTATTCGCCCAACTGAGTTTAGAGAAAGACTCAAAAAATTATAG 876 0.3904 MGASISSTASIREKNNEESNSSSSKTGLGDIPESCISSILMHLDPHDICKLARVNRAFHRASSADFVWESKLPSCYKFLANKFLGEENLSTMSKKDVYTKLCQPNRFDGGTKEVLLDKYSGQVCLFMSSKSLKITGIDDRRYWIYIPTEESRFKNVAYLQQMWWVEVIGELEFVFPVGSYSITFRLQLGKSSKRLGRRVCNDDQVHGWDIKPVRFQLSTSDGQRSISECYLHEPGQWAYYHVGDFMVTKPNKPIKIKFSLAQIDCTHTKGGLCIDSAIIRPTEFRERLKKL* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3790 291 PANTHER F-BOX PROTEIN PP2-A15 1 290 - -
Mtr1g3790 291 SMART fbox_2 31 70 IPR001810 GO:0005515
Mtr1g3790 291 Pfam Phloem protein 2 123 281 IPR025886 -
Mtr1g3790 291 Pfam F-box domain 30 64 IPR001810 GO:0005515
Mtr1g3790 291 SUPERFAMILY F-box domain 17 86 IPR036047 GO:0005515
Mtr1g3790 291 ProSiteProfiles F-box domain profile. 25 71 IPR001810 GO:0005515
Mtr1g3790 291 PANTHER F-BOX PROTEIN 1 290 - -
Mtr1g3790 291 Gene3D - 13 119 - -
Mtr1g3790 291 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3790 Mtr-Chr1 49443448 49447074 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3790 - - gmx:100795463 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3790 1 49443448 49447074 Mtr5g0321 5 2988419 2991835 ECH
Mtr1g3790 1 49443448 49447074 Mtr1g3790 1 49443448 49447074 ECH