Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g4100 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCGAGCACATAAATTTCAAGAAGAGAGAAGCATGCCAAAATTGTGGATACCCAAAGTATGGAGGCCCTGACCCATCGACCTATAGATATAACAGGACTGAAACGTTGGCAGGGGACTGGTTTTGCACTTCTATGAACTGTGGAGCTCACAACTATGCAAGCCGATCAAACTGCTATAGATGTGGTGCATTTAAAGATCCTTATTCTTCTGGATATGGGGGTAACATGGTGGGTTCTGGAGGATATGGATCAGATTGTAGTTCTCCCCCAGGATGGAAAAGTGGAGACTGGATTTGCCCTAGCAGAATTGGCTGTGGAATCCATAATTATGCAAGCAGGACAGAGTGCTACAAATGCAAAATGCCAAGGGATTATGGTGGTGCAGACTGA 426 0.4577 MSWSGGDWMCGACEHINFKKREACQNCGYPKYGGPDPSTYRYNRTETLAGDWFCTSMNCGAHNYASRSNCYRCGAFKDPYSSGYGGNMVGSGGYGSDCSSPPGWKSGDWICPSRIGCGIHNYASRTECYKCKMPRDYGGAD* 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g4100 141 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Mtr4g4100 141 Gene3D - 100 137 - -
Mtr4g4100 141 Gene3D - 42 79 - -
Mtr4g4100 141 Gene3D - 1 35 - -
Mtr4g4100 141 Pfam Zn-finger in Ran binding protein and others 105 134 IPR001876 -
Mtr4g4100 141 Pfam Zn-finger in Ran binding protein and others 49 75 IPR001876 -
Mtr4g4100 141 Pfam Zn-finger in Ran binding protein and others 6 32 IPR001876 -
Mtr4g4100 141 PANTHER ZINC FINGER PROTEIN 1 138 - -
Mtr4g4100 141 SMART zf_4 6 30 IPR001876 -
Mtr4g4100 141 SMART zf_4 50 76 IPR001876 -
Mtr4g4100 141 SMART zf_4 107 134 IPR001876 -
Mtr4g4100 141 ProSiteProfiles Zinc finger RanBP2 type profile. 105 137 IPR001876 -
Mtr4g4100 141 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 138 - -
Mtr4g4100 141 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Mtr4g4100 141 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Mtr4g4100 141 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Mtr4g4100 141 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Mtr4g4100 141 SUPERFAMILY Ran binding protein zinc finger-like 100 137 IPR036443 -
Mtr4g4100 141 SUPERFAMILY Ran binding protein zinc finger-like 45 78 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g4100 Mtr-Chr4 54968069 54970173 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g4100 - - gmx:100792208 261.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g4100 4 54968069 54970173 Mtr4g0235 4 2789914 2792574 ECH
Mtr4g4100 4 54968069 54970173 Mtr3g3932 3 53078645 53080001 ECH
Mtr4g4100 4 54968069 54970173 Mtr4g4100 4 54968069 54970173 ECH
Mtr4g4100 4 54968069 54970173 Mtr2g1999 2 28996027 28997576 PCT