Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g3932 ATGAGCAGACCAGGAGATTGGAACTGCAGGACATGCAACCACCTCAACTTTCAAAGAAGAGAATCTTGCCAACGATGTGGGGAGTCAAGAATGACTTCTGGCTGCGGCGCCGTTGATTTTGGTGGCTCCTTTCTTGGTGGAAGAGGCTCTAGCTCCCCTTTTCCTTTCACCACCGGCCCTGATGTCCGTCCTGGTGACTGGTATTGCACTGTTGGAAACTGTGGAGCTCACAACTTTGCCAGCCGCTCCAGCTGCTTCAAATGTGGTGCCCCTAAGGATATTGATACCTTCTCCTCTGACTCCTCAGACATGCCACGATTATTGAGATCACCATACGGTTTTGGAGCAGGCAGCGCTGGTGGCGGTGCCTCCACTCGCCCCGGCTGGAAATCCGGTGACTGGATATGCACCAGGTCTGGGTGTAACGAGCATAACTTCGCCAATAGAATGGAATGCTACCGATGCAACGGTCCAAGGGACTCTAGTACTGGAAGATCTTCCTATTTATCGTGA 513 0.5224 MSRPGDWNCRTCNHLNFQRRESCQRCGESRMTSGCGAVDFGGSFLGGRGSSSPFPFTTGPDVRPGDWYCTVGNCGAHNFASRSSCFKCGAPKDIDTFSSDSSDMPRLLRSPYGFGAGSAGGGASTRPGWKSGDWICTRSGCNEHNFANRMECYRCNGPRDSSTGRSSYLS* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g3932 170 SMART zf_4 5 29 IPR001876 -
Mtr3g3932 170 SMART zf_4 65 91 IPR001876 -
Mtr3g3932 170 SMART zf_4 132 158 IPR001876 -
Mtr3g3932 170 PANTHER RAN BP2/NZF ZINC FINGER-LIKE SUPERFAMILY PROTEIN 1 164 - -
Mtr3g3932 170 SUPERFAMILY Ran binding protein zinc finger-like 2 33 IPR036443 -
Mtr3g3932 170 Pfam Zn-finger in Ran binding protein and others 130 159 IPR001876 -
Mtr3g3932 170 Pfam Zn-finger in Ran binding protein and others 63 92 IPR001876 -
Mtr3g3932 170 Pfam Zn-finger in Ran binding protein and others 3 27 IPR001876 -
Mtr3g3932 170 ProSitePatterns Zinc finger RanBP2-type signature. 7 26 IPR001876 -
Mtr3g3932 170 ProSiteProfiles Zinc finger RanBP2 type profile. 3 32 IPR001876 -
Mtr3g3932 170 ProSitePatterns Zinc finger RanBP2-type signature. 134 155 IPR001876 -
Mtr3g3932 170 ProSitePatterns Zinc finger RanBP2-type signature. 67 88 IPR001876 -
Mtr3g3932 170 ProSiteProfiles Zinc finger RanBP2 type profile. 63 94 IPR001876 -
Mtr3g3932 170 Gene3D - 124 161 - -
Mtr3g3932 170 Gene3D - 59 94 - -
Mtr3g3932 170 Gene3D - 2 33 - -
Mtr3g3932 170 PANTHER ZINC FINGER PROTEIN 1 164 - -
Mtr3g3932 170 SUPERFAMILY Ran binding protein zinc finger-like 124 162 IPR036443 -
Mtr3g3932 170 ProSiteProfiles Zinc finger RanBP2 type profile. 130 161 IPR001876 -
Mtr3g3932 170 SUPERFAMILY Ran binding protein zinc finger-like 59 95 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g3932 Mtr-Chr3 53078645 53080001 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g3932 - - mtr:MTR_3g107610 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g3932 3 53078645 53080001 Mtr3g3932 3 53078645 53080001 ECH
Mtr4g4100 4 54968069 54970173 Mtr3g3932 3 53078645 53080001 ECH