Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1815 ATGGACACAGAAGCTGAAACTGTGCAGCCTCAGGCTGCACCAGTAAGGGCTCAAAGGAAGAAAATGACGAAACAATTGACGGGGAAGCGCGACGATACGCCGTTACATTCAGCAGCAAGAGCAGGGAACATGGCTTCTTTGAAGGATACAGTTGATGGTGCTGAAGAGGGTAAACTGCGCGAAATATTTGCAAAGCAGAATCAAGGTGGAGAAACAGCACTTTATGTTGCTGCTGAGTATGGTTATGTTGATATGGTTAGAGAGATGATTCAGTATTATGATCTTGCTGATGCTGGAATTAAAGCAAGAAATGGTTTTGATGCACTTCATATTGCTGCTAAACAAGGGGATTTAGATATTGTAAAGATCCTAATGGAAGCTCATTCTGAATTGTCAATGACTGTGGATCCATCCAACACCACCGCCTTACACACAGCTGCAACACAAGGACATACTGAGATAGTGAAATATCTATTAGAAGCAGGTAGTAGCTTGGCTACAATTGCTAGAAGTAATGGTAAAACAGCTTTGCATTCTGCTGCAAGAAATGGACACTTGGAGGTTGTGAAAGCGATTCTTGAGAAGGAGCCTGGTGTTGTTACAAGGACTGATAAAAAGGGACAGACGGCGCTTCACATGGCGGTGAAGGGACAGAGTCTTGTGGTGGTAGAGGAGTTGATAAAAGCAGATCCATCAACAATAAACATGGTTGATAATAAGGGTAATACAGCGCTGCATATAGCAACCAGGAAGGGAAGAACTCAGATTATCAAGTTGATACTTGGACAAAGTGAAACAAATGGCATGGCAGTAAACAAAAGTGGCGAAACAGCGTTAGACACAGCTGAGAAAACAGGAAATTCTGAAGTAAAAAGCATTCTTACAGAACACGGTGTTCAAAGCAGCAAATCGATAAAATCTCAACCAAAAACAGCTGCAACCAGAGAATTAAAACAAACAGTCAGTGACATAAAGCATGAAGTCCATCACCAACTAGAACACACTCGCCAAACGCGAAGAAGCGTTCAAGGAATCGCAAAACGTCTCAACAAAATGCACACAGAAGGACTCAACAATGCAATAAACTCCACAACAGTCGTCGCAGTCCTCATAGCAACGGTTGCCTTCGCAGCCATCTTCACTGTCCCAGGCCAATTCGTGGATGATCCAAAAAAAGTTCGTAAAGGAAAATCCCTTGGCGAAGCAAACATAGCTTCAGAACCTGCGTTTCTAGTATTCATCGTGTTTGATTCGGTTGCGCTTTTCATCTCCCTCGCGGTTGTGGTGGTTCAAACATCAATAGTTGTTGTTGAAAGCAAAGCAAAGAAACAAATGATGGCTATTATTAACAAACTAATGTGGGTAGCTTGTGTGCTTATATCTGTGTCATTTTTGGCTTTGTCATTTTTAGTTGTGGGGAAAAAACAAAGATGGCTTGCAATTGGGGTAACTATTATTGGGACTACCATAATGGCTACTACATTGGGTACTATGAGTTATTGGGTTATTAGGCATAGAATTGAAGCTTCAAGTATACGAAAATCTTCAATGGGAAGTAGGTCAAGGTCTTTTTCAGTTTCAGTTGTTATGTCTGATTCTGAGATATTAAACAATGAGCGTACTAAAATGTATGCTATTTAG 1641 0.4132 MDTEAETVQPQAAPVRAQRKKMTKQLTGKRDDTPLHSAARAGNMASLKDTVDGAEEGKLREIFAKQNQGGETALYVAAEYGYVDMVREMIQYYDLADAGIKARNGFDALHIAAKQGDLDIVKILMEAHSELSMTVDPSNTTALHTAATQGHTEIVKYLLEAGSSLATIARSNGKTALHSAARNGHLEVVKAILEKEPGVVTRTDKKGQTALHMAVKGQSLVVVEELIKADPSTINMVDNKGNTALHIATRKGRTQIIKLILGQSETNGMAVNKSGETALDTAEKTGNSEVKSILTEHGVQSSKSIKSQPKTAATRELKQTVSDIKHEVHHQLEHTRQTRRSVQGIAKRLNKMHTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPKKVRKGKSLGEANIASEPAFLVFIVFDSVALFISLAVVVVQTSIVVVESKAKKQMMAIINKLMWVACVLISVSFLALSFLVVGKKQRWLAIGVTIIGTTIMATTLGTMSYWVIRHRIEASSIRKSSMGSRSRSFSVSVVMSDSEILNNERTKMYAI* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1815 546 PANTHER ANKYRIN REPEAT PLANT PROTEIN 9 546 - -
Mtr4g1815 546 Pfam Ankyrin repeat 241 262 IPR002110 GO:0005515
Mtr4g1815 546 ProSiteProfiles Ankyrin repeat profile. 138 170 IPR002110 GO:0005515
Mtr4g1815 546 MobiDBLite consensus disorder prediction 1 48 - -
Mtr4g1815 546 ProSiteProfiles Ankyrin repeat region circular profile. 172 195 - -
Mtr4g1815 546 ProSiteProfiles Ankyrin repeat region circular profile. 138 165 - -
Mtr4g1815 546 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 9 546 - -
Mtr4g1815 546 Pfam Ankyrin repeats (3 copies) 172 231 IPR002110 GO:0005515
Mtr4g1815 546 Pfam Ankyrin repeats (3 copies) 96 165 IPR002110 GO:0005515
Mtr4g1815 546 Pfam Ankyrin repeats (3 copies) 22 92 IPR002110 GO:0005515
Mtr4g1815 546 Gene3D - 11 167 IPR036770 -
Mtr4g1815 546 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Mtr4g1815 546 MobiDBLite consensus disorder prediction 296 315 - -
Mtr4g1815 546 Gene3D - 168 342 IPR036770 -
Mtr4g1815 546 ProSiteProfiles Ankyrin repeat profile. 240 261 IPR002110 GO:0005515
Mtr4g1815 546 Pfam Domain of unknown function 355 470 IPR026961 -
Mtr4g1815 546 ProSiteProfiles Ankyrin repeat region circular profile. 104 132 - -
Mtr4g1815 546 SMART ANK_2a 240 273 IPR002110 GO:0005515
Mtr4g1815 546 SMART ANK_2a 138 167 IPR002110 GO:0005515
Mtr4g1815 546 SMART ANK_2a 206 236 IPR002110 GO:0005515
Mtr4g1815 546 SMART ANK_2a 172 202 IPR002110 GO:0005515
Mtr4g1815 546 SMART ANK_2a 274 305 IPR002110 GO:0005515
Mtr4g1815 546 SMART ANK_2a 69 98 IPR002110 GO:0005515
Mtr4g1815 546 SMART ANK_2a 104 133 IPR002110 GO:0005515
Mtr4g1815 546 SMART ANK_2a 30 61 IPR002110 GO:0005515
Mtr4g1815 546 SUPERFAMILY Ankyrin repeat 34 299 IPR036770 -
Mtr4g1815 546 ProSiteProfiles Ankyrin repeat profile. 104 136 IPR002110 GO:0005515
Mtr4g1815 546 ProSiteProfiles Ankyrin repeat region circular profile. 240 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1815 Mtr-Chr4 31194891 31198854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1815 1 546 Miscellaneous Gene Families AT1G07710 69.273 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1815 - - gmx:100809687 835.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1815 4 31194891 31198854 Mtr4g1815 4 31194891 31198854 ECH
Mtr2g3310 2 47170280 47173176 Mtr4g1815 4 31194891 31198854 ECH
Mtr7g3043 7 47261107 47265027 Mtr4g1815 4 31194891 31198854 ECH