Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g3310 ATGGGTGAATCCAGCATGGCAACACCAATGGTGCATACACCTAGGAAAAAAATGACAAAACAATTGACTGGAAAAAGGGATGATACACCTTTGCATTCTGCAGCAAGATCAGGGAATTTAGATGTTGTGAGGGATATTCTTAATGATGCTCAAGAGGATGAATTGCTTGAATTATTGGCTAGGCAGAACCAAGATGGAGAAACAGCTCTTTATGTTGCTGCTGAGTATGGTTATATTGATGTCGTTCGGGGAATGATTCAATATTATGATCTTGCTTGTGCTGGAATTAAAGCAAGAAACGGTTTTGATGCATTTCATATTGCTGCTAAACAAGGAGATATAGATATATTGAAGATCCTTATGGAGGTTCATCCTGAATTGTCAATGACAGTGGATCCATCAAACACAACAGCTTTGCATACAGCTGCAACACAAGGACATATTGAGATAGTGAAATTCCTATTGGAAGCAGGAAGTAGTTTGGCAACCATTGCTAAAAGTAACGGGAAAACGGCTCTTCATTCTGCTGCAAGAAATGGACATTCGGAGGTTGTGAAAGCACTTCTTGAGAAAGAGCCAGGAGTTGCAACAAGGACTGATAAGAAGGGCCAGACAGCACTTCACATGGCAGTAAAGGGACAAAATCTTGAGGTAGTGGAAGAGCTGATAAAAGCAGATCCTTCAACAATAAACATGGTTGATAATAAAGGAAACACAACATTGCATATAGCAACCAGGAAAGCCAGAACTCGGATTGTAAATATGCTTCTAGGACAAAAGGAAACAGATGTGAGTGCTGTTAACAGATCAGGTGAAACAGCAGTAGACACTGCTGAGAAAATAGGGAACCAGGATGTTAAAGCCATTCTATTAGATCATGGTGTTCAAAGTGCAAAATCCATGAAACCACAAGGATCAAAAAGCACAGCTCACGAGTTAAAGCAAACTGTAAGCGACATAAAGCACGAGGTACATTACCAATTAGAACACACACGCCAGACACGAAAACGTGTTCAAGGAATCGCAAAACGTATCAACAAGATGAATACAGAAGGACTCAACAATGCAATAAACTCAACAACCGTTGTGGCAGTACTAATAGCAACGGTTGCATTTGCTGCGATTTTCACTGTCCCTGGTCAATTTGTTGATGATCCAAACAATATTCCAGAAGGGATGATACTTGGTGAAGCAAATATATCTCCAGAAGCACCGTTTATAATTTTCTTTGTATTTGATTCTATTGCACTCTTCATTTCTCTGGCTGTTGTGGTTGTTCAAACTTCGGTTGTTGTTATCGAAAGCAAAGCAAAGAAACAAATGGCGGCTATAATTAATAAGCTAATGTGGTTGGCTTGTGTGCTTATTTCTGTGGCATTTTTAGCATTGTCATTTGTTGTTGTTGGAAAGGAAGAAAAATGGTTGGCAATTTTTGTTACCATTATAGGAGCAACTATAATGGCTACAACTTTGGGAACTATGTGTTATTGGGTCATTAAGCATCGAATTGAGGCATCAAACTTGAGGAACATTAGGAAATCTTCAATGGAAAGCAAATCAAAGTCTTTTACAGTGACAGCTTTGTCAGATTCTGAGCTAATGAACAATGAATTTAAGAAAATGTATGCTATTTAG 1635 0.3878 MGESSMATPMVHTPRKKMTKQLTGKRDDTPLHSAARSGNLDVVRDILNDAQEDELLELLARQNQDGETALYVAAEYGYIDVVRGMIQYYDLACAGIKARNGFDAFHIAAKQGDIDILKILMEVHPELSMTVDPSNTTALHTAATQGHIEIVKFLLEAGSSLATIAKSNGKTALHSAARNGHSEVVKALLEKEPGVATRTDKKGQTALHMAVKGQNLEVVEELIKADPSTINMVDNKGNTTLHIATRKARTRIVNMLLGQKETDVSAVNRSGETAVDTAEKIGNQDVKAILLDHGVQSAKSMKPQGSKSTAHELKQTVSDIKHEVHYQLEHTRQTRKRVQGIAKRINKMNTEGLNNAINSTTVVAVLIATVAFAAIFTVPGQFVDDPNNIPEGMILGEANISPEAPFIIFFVFDSIALFISLAVVVVQTSVVVIESKAKKQMAAIINKLMWLACVLISVAFLALSFVVVGKEEKWLAIFVTIIGATIMATTLGTMCYWVIKHRIEASNLRNIRKSSMESKSKSFTVTALSDSELMNNEFKKMYAI* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g3310 544 Pfam Ankyrin repeats (3 copies) 95 160 IPR002110 GO:0005515
Mtr2g3310 544 Pfam Ankyrin repeats (3 copies) 168 227 IPR002110 GO:0005515
Mtr2g3310 544 Pfam Ankyrin repeats (3 copies) 18 88 IPR002110 GO:0005515
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat profile. 100 132 IPR002110 GO:0005515
Mtr2g3310 544 Gene3D - 123 316 IPR036770 -
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat profile. 26 48 IPR002110 GO:0005515
Mtr2g3310 544 Gene3D - 10 122 IPR036770 -
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat profile. 236 257 IPR002110 GO:0005515
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat region circular profile. 202 224 - -
Mtr2g3310 544 Pfam Domain of unknown function 351 467 IPR026961 -
Mtr2g3310 544 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10 544 - -
Mtr2g3310 544 SMART ANK_2a 100 129 IPR002110 GO:0005515
Mtr2g3310 544 SMART ANK_2a 236 266 IPR002110 GO:0005515
Mtr2g3310 544 SMART ANK_2a 65 93 IPR002110 GO:0005515
Mtr2g3310 544 SMART ANK_2a 168 197 IPR002110 GO:0005515
Mtr2g3310 544 SMART ANK_2a 134 163 IPR002110 GO:0005515
Mtr2g3310 544 SMART ANK_2a 26 55 IPR002110 GO:0005515
Mtr2g3310 544 SMART ANK_2a 202 232 IPR002110 GO:0005515
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat region circular profile. 168 191 - -
Mtr2g3310 544 PANTHER ANKYRIN REPEAT PLANT PROTEIN 10 544 - -
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat profile. 134 166 IPR002110 GO:0005515
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat profile. 168 200 IPR002110 GO:0005515
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat region circular profile. 134 161 - -
Mtr2g3310 544 SUPERFAMILY Ankyrin repeat 30 295 IPR036770 -
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat region circular profile. 236 257 - -
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat profile. 202 224 IPR002110 GO:0005515
Mtr2g3310 544 MobiDBLite consensus disorder prediction 1 34 - -
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat region circular profile. 100 122 - -
Mtr2g3310 544 ProSiteProfiles Ankyrin repeat region circular profile. 26 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g3310 Mtr-Chr2 47170280 47173176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g3310 14 544 Miscellaneous Gene Families AT1G07710 74.953 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g3310 - - gmx:100779230 862.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3310 2 47170280 47173176 Mtr2g3310 2 47170280 47173176 ECH
Mtr2g3310 2 47170280 47173176 Mtr4g1815 4 31194891 31198854 ECH
Mtr7g3043 7 47261107 47265027 Mtr2g3310 2 47170280 47173176 ECH