Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr3g2165 ATGAAAACAAAGATCTTCAAGATAGTAGTAAAATTTTTGACCAAAAAAGGTAAAGTTGATAAGGAAGAGCCGCTTTTTGATCTTAAGGAAGCTTTTTCCAAGTTTGCAAATGGTGAGAATCACATGTCAAAGGAACAACTACTTAGATTCATGGTGGAGTATCAAGGAGAGCAAAATTGCACCTTATTGGATTTGGAGCCAATCATTGAAAAGGTTTTGAAAATGGAAAGTTCTAACACTGAAACTAGCAGTATTGTTGGACTCAGTTTGGATGACTTCATAAATTTTCTGCTTGTTGATGATTTCAATGGTCCCTTAAAAGATGAGGTACATCATGATATGGAAGCTCCTTTGTCACATTATTTCATGTATACAGGACACAATTCCTACCTTACTGGAAATCAATTTACTAGTGAGAGCAGTGATAAACCAATTATAGAGGCTTTGAAACAAGGTGTACGAGTAATTGAACTTGATTTATGGCCATCTTCAACTAAAGATGGTGGTATTAAAGTAGTTCATGGAAAGACTCTCACCACTCCAGTTGCACTAACCAAATGTTTGGAAGCCATAAAAGAATATGCTTTTGTTAAATCTGATTTTCCAGTGATTCTAACTTTAGAAGACCACCTAACACCAAAGCTTCAGTATAACTTTGCAAAAATAGCAATTCAAATATTTGGAAATATGCTTTATCGTCCTGGGACAGATTGTTTAACAGAATTTCCCTCGCCAGCATCACTCAAAAATATGGTACTTATATCAACTAAATCACCAAAAGAATATAATCAATCTGATAGTGTCAGCAATCAGGTGTTAAATGGATGTGAATCATCTGAAGACGAATCATGGGAATTGCAAGATTCTATGGTTAAACTGAAAACTGAAGAAAAGAGTGTAAATGATGAAGACAAGGAAGATATAAATACAAATGCTTTCAAATCAAACCAGCAAGTTGCACTTCAATACAAACATTTGATTGCAATTCATGGTGGAAAATCAGAAGGTAACATGAAGGATATACTAAAAGTTGATGGTGGTAAAGTCAGAAGGCTAAGTTTGAGTGAGAAGAAACTCAAAACTGCTTCTAAATCTCATGGGCCTGACCTAATTAGGTTCACACAGAAAAATATCCTCAGAATTTATCCTAAAGGAGAACGTGTCCGATCCTCAAATTTTAGGCCACTTTTAGGGTGGATGTATGGAGCTCAGATGGTTGCATGCAATATGCAGGGGCATGGCAAACCACTCCGGTTGATGCAAGGGATGTTCAAAGCGAATGGAGGGTGTGGTTATGTGAAAAAACCTGAATTTCTAATTCAAGAAGTTGCAAATAATGAGGCTTTTGATCCTAAAAGAAAGTTGCCAGCGAAGCAGATATTAAAAGTAAAAGTATATAAAGGAGTTGGTTGGAGTTCAGATTTTAGTCCAACGCACTTCGATCGATTCTCTCCACCAGACTTTTACACAAAGGTTTCTATTGCTGGAGTGAGAGCTGATTGTGCCAAGAAGAAAACAAGTGTAAAGATGGACAATTGGAATCCCATTTGGGACGAAGAGTTTGAGTTCCGTTTGACAGTTCCGGAGCTCGCGTTGCTCCGGATCGAAGTAAAGGATAAAGATCAGACAAAAGATGATTTTGCTGGACAGACTTGTTTGCCAGTATCAGAGCTAAGACATGGATTTCGGTCTGTTGCTTTGTGTGACAGAAAGGGAAAGAAATATAACTCTGTCAAGCTTTTACTTGGATTCCAACTAGAAACTTTGAAAATGTTGTAA 1779 0.3693 MKTKIFKIVVKFLTKKGKVDKEEPLFDLKEAFSKFANGENHMSKEQLLRFMVEYQGEQNCTLLDLEPIIEKVLKMESSNTETSSIVGLSLDDFINFLLVDDFNGPLKDEVHHDMEAPLSHYFMYTGHNSYLTGNQFTSESSDKPIIEALKQGVRVIELDLWPSSTKDGGIKVVHGKTLTTPVALTKCLEAIKEYAFVKSDFPVILTLEDHLTPKLQYNFAKIAIQIFGNMLYRPGTDCLTEFPSPASLKNMVLISTKSPKEYNQSDSVSNQVLNGCESSEDESWELQDSMVKLKTEEKSVNDEDKEDINTNAFKSNQQVALQYKHLIAIHGGKSEGNMKDILKVDGGKVRRLSLSEKKLKTASKSHGPDLIRFTQKNILRIYPKGERVRSSNFRPLLGWMYGAQMVACNMQGHGKPLRLMQGMFKANGGCGYVKKPEFLIQEVANNEAFDPKRKLPAKQILKVKVYKGVGWSSDFSPTHFDRFSPPDFYTKVSIAGVRADCAKKKTSVKMDNWNPIWDEEFEFRLTVPELALLRIEVKDKDQTKDDFAGQTCLPVSELRHGFRSVALCDRKGKKYNSVKLLLGFQLETLKML* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr3g2165 592 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 353 439 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Mtr3g2165 592 SMART C2_3c 460 567 IPR000008 -
Mtr3g2165 592 PANTHER PHOSPHOINOSITIDE PHOSPHOLIPASE C 1 592 - -
Mtr3g2165 592 SMART plcx_3 112 257 IPR000909 -
Mtr3g2165 592 PRINTS Phospholipase C signature 117 135 IPR001192 GO:0035556
Mtr3g2165 592 PRINTS Phospholipase C signature 143 163 IPR001192 GO:0035556
Mtr3g2165 592 PRINTS Phospholipase C signature 241 258 IPR001192 GO:0035556
Mtr3g2165 592 PRINTS Phospholipase C signature 378 399 IPR001192 GO:0035556
Mtr3g2165 592 PRINTS Phospholipase C signature 399 417 IPR001192 GO:0035556
Mtr3g2165 592 PRINTS Phospholipase C signature 553 563 IPR001192 GO:0035556
Mtr3g2165 592 Pfam Phosphatidylinositol-specific phospholipase C, X domain 114 257 IPR000909 -
Mtr3g2165 592 Gene3D Phosphatidylinositol (PI) phosphodiesterase 109 452 IPR017946 GO:0006629|GO:0008081
Mtr3g2165 592 SMART plcy_3 323 440 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Mtr3g2165 592 ProSiteProfiles C2 domain profile. 441 569 IPR000008 -
Mtr3g2165 592 Gene3D C2 domain 456 591 IPR035892 -
Mtr3g2165 592 Pfam C2 domain 460 560 IPR000008 -
Mtr3g2165 592 SUPERFAMILY PLC-like phosphodiesterases 112 441 IPR017946 GO:0006629|GO:0008081
Mtr3g2165 592 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 460 585 IPR035892 -
Mtr3g2165 592 Gene3D - 25 104 - -
Mtr3g2165 592 SUPERFAMILY EF-hand 24 114 IPR011992 -
Mtr3g2165 592 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 352 438 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Mtr3g2165 592 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 1 592 IPR001192 GO:0035556
Mtr3g2165 592 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 112 257 - -
Mtr3g2165 592 CDD C2_PLC_like 458 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr3g2165 Mtr-Chr3 35193625 35198368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr3g2165 9 587 Acyl Lipid Metabolism Gene Families AT2G40116 53.411 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr3g2165 K05857 - gmx:100803435 855.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g2165 3 35193625 35198368 Mtr5g2821 5 36746634 36752163 ECH
Mtr5g2398 5 31392374 31397588 Mtr3g2165 3 35193625 35198368 ECH
Mtr3g2165 3 35193625 35198368 Mtr3g2165 3 35193625 35198368 ECH
Mtr3g2165 3 35193625 35198368 Mtr5g2819 5 36717715 36722190 PCT