Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3394 ATGGATAAGCTTTCATCAACAACTAGATTTGAAAGTGTGCATTATGGTATTGTAAACCAAATGAATTTCATTTGGCAACAAGCTAGGGTACCCCTTATAGTTCCAGTGTTGAAATTGTTGGTAGTTTTGTGTTTGACTATGTCAGTTATGCTTTTTGTGGAGAGAGTTTATATGGGTATAGTCATTGTCTTTCTTAAGTTGTTTGGTCATAAACCAGAGAAACATTATAAATGGGAGGCACTTAAGGATGATGATATTGAGCTTGGAAATTCTGCTTTTCCAATGGTTTTGGTGCAAATCCCAATGTATAATGAAAAGGAGGTGTATCAATTATCAATTGGAGCTGCATGTGGGTTATCATGGCCATCTGATAGAATTATTATTCAAGTTCTTGATGACTCAACAGATCCAATCATTAAGAATATGGTGGAGATAGAATGTGAGAGATGGAGAAGAAAAGGCATAAACATAAAGTATGAGATAAGGGAAAATAGAAATGGTTACAAAGCTGGTGCTCTTAAAGAAGGAATGAAGCATAGCTATGTCAAACTTTGTGACTATGTTGCCATCTTTGATGCTGATTTTCAACCTGAGTCTAACTTTCTTTACCGCACCATTCCATTCCTTGATCAAAATCCACAAGTTGGACTAGTTCAAGCTCGATGGCAATTCGTTAATGCTGATGAATGCTTAATGACAAGAATGCAAGAGATGTCATTGGACTATCATTTCCTTGTGGAACAGGAAGTTGGTTCCATAACTCATGCTTTCTTTGGTTTCAATGGTACAGCTGGTGTTTGGAGAATTTCAGCACTAAATGAAGCTGGTGGATGGAAGGACCGCACAACAGTGGAAGATATGGACCTAGCAGTAAGAGCCAGTCTCAAAGGATGGAAATTTGTGTACCTTAGTGACCTCAAGGTAAAAAGTGAATTGCCAAGTACATTCAAAGCCTACCGTTATCAGCAACACAGGTGGTCATGTGGCCCAGCTAATCTCTTCAGGAAAATGGCAATGGAAATCATAAGAAACAAGAAAGTGACCATGTTGAAGAAGTTTTATGTGATATATAGTTTTTTCTTTGTTCGGAAGATCATAGCCCATGTGGTCACATTTACATTTTACTGTGTCATTTTGCCTGCAACTGTTTTAGTTCCAGAAGTAGAAGTTCCCAAGTGGGGTGCTGTCTATATACCTTGTATTATTACACTCCTCAATGCTGTTGGAACTCCAAGGTCATTCCACTTGGTAATATTGTGGATACTTTTTGAAAATGTTATGTCAATGCATAGGACCAAGGCAACACTTATAGGTTTGTTTGAGGCAGGTAGGGTAAATGAATGGGTGGTTACTGAGAAATTGGGTGACGCTCTTAAAATAAAATCAGGAGGTAAAGCAGCTAGAAAGCCTCGTATCACTATCGATGGAAGGATTCATTTCCTAGAACTTGGTGTGGGAGCCTATCTCTTTTTGTGTGGATGCTACGATCTTGCCTTTGGGAAGAATCAGTGCTATATATATCTTTTCCTGCAATCTATTGCCTTCTTTGTTGTGGGGGTTGGCTATGTTGGCATCTATGTTCCCAGATCTTAG 1593 0.3861 MDKLSSTTRFESVHYGIVNQMNFIWQQARVPLIVPVLKLLVVLCLTMSVMLFVERVYMGIVIVFLKLFGHKPEKHYKWEALKDDDIELGNSAFPMVLVQIPMYNEKEVYQLSIGAACGLSWPSDRIIIQVLDDSTDPIIKNMVEIECERWRRKGINIKYEIRENRNGYKAGALKEGMKHSYVKLCDYVAIFDADFQPESNFLYRTIPFLDQNPQVGLVQARWQFVNADECLMTRMQEMSLDYHFLVEQEVGSITHAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFVYLSDLKVKSELPSTFKAYRYQQHRWSCGPANLFRKMAMEIIRNKKVTMLKKFYVIYSFFFVRKIIAHVVTFTFYCVILPATVLVPEVEVPKWGAVYIPCIITLLNAVGTPRSFHLVILWILFENVMSMHRTKATLIGLFEAGRVNEWVVTEKLGDALKIKSGGKAARKPRITIDGRIHFLELGVGAYLFLCGCYDLAFGKNQCYIYLFLQSIAFFVVGVGYVGIYVPRS* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3394 530 Pfam Glycosyltransferase like family 2 95 329 - -
Mtr1g3394 530 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 86 313 IPR029044 -
Mtr1g3394 530 SUPERFAMILY Nucleotide-diphospho-sugar transferases 92 372 IPR029044 -
Mtr1g3394 530 PANTHER - 9 529 - -
Mtr1g3394 530 CDD CESA_CaSu_A2 94 330 - -
Mtr1g3394 530 PANTHER BNAC09G36340D PROTEIN 9 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3394 Mtr-Chr1 45179733 45183005 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3394 17 528 Miscellaneous Gene Families AT5G03760 76.608 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3394 K13680 - gmx:100797453 912.524
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3188 7 48862116 48867980 Mtr1g3394 1 45179733 45183005 ECH
Mtr1g2080 1 30733355 30742183 Mtr1g3394 1 45179733 45183005 ECH
Mtr1g3394 1 45179733 45183005 Mtr1g3394 1 45179733 45183005 ECH