Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g2080 ATGGAGGCATTTAAAGTAGCAAGTGAAGGAGTTGGTATGCAACTTGAGTTCATATGGAAGAATATCAGAGAACCTTTGATAGTGCCAATGTTGAGATGGACAGTGTATTTGTGCTTAGGTTTGTCATTGATAATGTTGGTTGAAAAAGTATACATGGCAATTGTCATTTGTTATGTGAAGTTGTTTAAGAGAACACCAGAGAAGTGTTATAAATTTAAGGCTATTGAGGATGATGTTGAGTTGGGAAACTCTAATTATCCCATGGTTCTTGTTCAAGTTCCAATGTACAATGAAAGAGAGGTTTATCAGCTATCAATTGGTGCTGCATGTGAACTCTCTTGGCCTTCTGATAGAATCATCATACAAATTCTTGATGATTCCACTGACCCAACCATCAAGGTGATTGTAACAAGTGAACCAAAAAAAATGCAGGAGTTAGTACAGGAAGAATGCCGTAGATGGCGAAACAAAGGTGTGAACATAAAGTATGAAGTTAGGGACAACAGAAATGGGTACAAAGCTGGTGCTCTAAAGGAGGGAATGAAACATAGTCATGTCCTACAATGTGAATATGTTGCCATCTTTGATGCTGATTTTCAACCTGAACCTGATTTTCTCCTCCGAACCATCCCTTTTCTTGTCAATAATCCTGAGATTGGTCTCGTTCAAGCTCGCTGGAAGTTTGTGAATGCAAATGAATGTTTAATGACGAGGATGCAACAAATGTCACTTGATTACCATTTTAAGGTGGAACAAGAAGTAGGGTCTTCCACTTATGCCTTCTTTGGCTTCAATGGGACTGCTGGTGTATGGAGAATTTCGGCGTTGAATGAAGCGGGTGGATGGAAAGATAGAACCACCGTCGAAGACATGGATTTGGCTGTACGTGCTAGTCTCAAAGGATGGAAATTCCTATATCTCTCCAATTTACAGGTTCCATTTTCTTAA 948 0.3935 MEAFKVASEGVGMQLEFIWKNIREPLIVPMLRWTVYLCLGLSLIMLVEKVYMAIVICYVKLFKRTPEKCYKFKAIEDDVELGNSNYPMVLVQVPMYNEREVYQLSIGAACELSWPSDRIIIQILDDSTDPTIKVIVTSEPKKMQELVQEECRRWRNKGVNIKYEVRDNRNGYKAGALKEGMKHSHVLQCEYVAIFDADFQPEPDFLLRTIPFLVNNPEIGLVQARWKFVNANECLMTRMQQMSLDYHFKVEQEVGSSTYAFFGFNGTAGVWRISALNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLSNLQVPFS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g2080 315 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 78 313 IPR029044 -
Mtr1g2080 315 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN A1 1 312 - -
Mtr1g2080 315 PANTHER - 1 312 - -
Mtr1g2080 315 Pfam Glycosyl transferase family 2 92 256 IPR001173 -
Mtr1g2080 315 SUPERFAMILY Nucleotide-diphospho-sugar transferases 84 309 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g2080 Mtr-Chr1 30733355 30742183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g2080 2 312 Miscellaneous Gene Families AT5G03760 71.383 9.91e-169 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g2080 K13680 - gmx:100808118 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g2080 1 30733355 30742183 Mtr1g3394 1 45179733 45183005 ECH
Mtr1g2080 1 30733355 30742183 Mtr1g2080 1 30733355 30742183 ECH