Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3349 ATGGCACCAAAGGGAGAGAAGAAGCCCGCTGAGAAGAAGCCAGCAGAAAAAGCTCCCGCAGAGAAAACCAAAGCGGAGAAGAAGATCCCAAAGGAAGCTTCCTCTGCCGACAAGAAGAAAAAGAGAAACAAGAAGAGCGTAGAAACCTACAAGATCTACATCTTCAAGGTTCTCAAGCAGGTTCATCCTGACATTGGAATCTCCAGCAAGGCTATGGGGATCATGAACAGTTTCATCAATGACATCTTTGAGAAGCTCGCTCAGGAATCATCCAGACTCGCTCGCTACAACAAGAAACCTACCATCACCTCTCGTGAGATTCAGACTGCTGTTCGTCTCGTTCTTCCCGGCGAACTTGCCAAGCACGCTGTCTCCGAGGGAACCAAAGCAGTCACTAAATTTACAAGCTCTTGA 414 0.4783 MAPKGEKKPAEKKPAEKAPAEKTKAEKKIPKEASSADKKKKRNKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3349 137 PANTHER HISTONE H2B 5 137 - -
Mtr1g3349 137 SUPERFAMILY Histone-fold 25 137 IPR009072 GO:0046982
Mtr1g3349 137 Gene3D Histone, subunit A 7 137 IPR009072 GO:0046982
Mtr1g3349 137 SMART h2b3 40 136 IPR000558 GO:0000786|GO:0003677|GO:0030527
Mtr1g3349 137 PRINTS Histone H2B signature 50 68 IPR000558 GO:0000786|GO:0003677|GO:0030527
Mtr1g3349 137 PRINTS Histone H2B signature 69 89 IPR000558 GO:0000786|GO:0003677|GO:0030527
Mtr1g3349 137 PRINTS Histone H2B signature 91 108 IPR000558 GO:0000786|GO:0003677|GO:0030527
Mtr1g3349 137 PRINTS Histone H2B signature 108 121 IPR000558 GO:0000786|GO:0003677|GO:0030527
Mtr1g3349 137 PRINTS Histone H2B signature 121 134 IPR000558 GO:0000786|GO:0003677|GO:0030527
Mtr1g3349 137 Pfam Core histone H2A/H2B/H3/H4 7 113 IPR007125 GO:0003677
Mtr1g3349 137 PANTHER HISTONE H2B 5 137 IPR000558 GO:0000786|GO:0003677|GO:0030527
Mtr1g3349 137 ProSitePatterns Histone H2B signature. 105 127 IPR000558 GO:0000786|GO:0003677|GO:0030527
Mtr1g3349 137 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3349 Mtr-Chr1 44632016 44632798 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3349 K11252 - ming:122057363 211.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2544 7 42048141 42051485 Mtr1g3349 1 44632016 44632798 ECH
Mtr1g1603 1 20233443 20238322 Mtr1g3349 1 44632016 44632798 ECH
Mtr1g3349 1 44632016 44632798 Mtr1g3349 1 44632016 44632798 ECH