Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g2544 ATGTGGGCACTTCGTCGAGCTTCATTATCTCTCAGGAATAAAAGTTTTAATGTTAGGGTTTCTTCTGTGAAATTATTGCCAAATACTTCTGTTGAAGATGAGTCTGGAGTTTTTGATTCTCCAAAAATGGTTTGTGCTAAGTGTGGATTTTCGTCGATGAATCTATGTTATTGTTCGGGTTCAAATTCAGGACATGGTTTTTTAAAATTTAGTTTGGGTAGATTAGGGTTTTCTTCGGAAGCTGGTGCGAAAACTACGAAAGAGGAGGATGATGATTTGGAGGATGGGTTTTCGGAGCTGGAGACGCCGCTGGGTGAGGAAAGTGAAAAAGGGGTAGTTTCTGATAGTGAAGATTCTGATGAGAGTGATGAATCGGAAATTACGGGGCCACATAATGAGCTGGAGTTACCGTTATCGCATGATGTGGATGAGGTTTCAACGGGGAAGAGGTCGAGTAGAAAGAGGGCTGATTCGGAACTTTTTAAAGCTATTATGAATGGTACCGGGCCTACTATTTATACGGCTTTGGAAAAGTGGGTTGAAGATGGGAAAGAATTGAGCAGAGAGGAGATTTCACTGACTATGATTAATCTCCGGAGGCGGAAGATTTATTTGAAAGCTTTGCAGCTCTCAGAGTGGCTCGAGTCAAAGAAGCATCTTGAATTCGTTGAAAGGGATTATGCTTCCCAACTTGATTTAATTGCCAAATTGCATGGCCTACATAAGGCAGAAGTTTACATTGAGAAAATTCCAGAATCCTTTAGAGGGGAGATAATATACCGAACTTTATTGGCTAACTGTGTTACTCAGAACAATTTGAAGAAAGCAGAAGAAATTTTTAATAAAATGAAGGATTTAGAGTTTCCTCTTACACCATTTGCGTGTAATCAGTTGCTCCTTCTGTATAAGAGGACTGACAAAAAGAAAATAGCTGATGTGTTATTGCTGATGGAACAAGAGAATGTCAAACCTTCTCCTCTGACTTTTAAGATCTTAATAGATGTAAAAGGCCAGTCCAATGATATTGATGGAATGGATCAAATTGTTGATCAAATGAGGGCTGAGGGTATTGAACCGGACAACTATACAAAGGCAGTTTTGGTTGGGCATTACATCTCAGGCGGGCATGATGATAAAGCTAAAATGTTGTTGAAGGAGATGGAAGGTGAAAACTTGAAGGAGAATCGGTGGGTCTGTCGACTTTTGCTTGCTCTCTATGCAAAGTTGGGAATGGCCGATGAAGTGGGAAGAGTTTGGAAGGTCTGTGAGACACGCCCTTCAGTTGAGGATTGTGTAGCTGCAATTGAAGCCTGGGGAAAGTTGAAGAAAATTGATGAAGCAGAGGCAGTTTTTGAGGTGATGGCAAGAAAATGGAAGCTTACGTCCAAGAACTGCTCAGTACTACTGAATGTTTATGCAAACAACAAGATGCTAACGAAGGGCAAGGATCTTATTAAGCGAATGGCACATAAAGGATGTCGAATAGGCCCGCTGACCTGGAATGCATTAGTGAAACTTTATGTCCAAGCAGGGGAAGTGGAAAAGGCTGACAGTGTTCTGCAGAAGGCAATCCAGCAGAGTCCGGTGAGGCCAATATTTTCTTCCTATAATACTCTTCTTGAGGAGTATTCTAAGAGGGGTGACATCCATAATTCGGAAAAGATCTTCTACAGAATGAAACAGGCTGGTTATATATCTCGACTAAAGCAGTACCAAATTCTTATAGAGGCATATAGGAGGGCCAATGTTCCAGCTTATGGGATTAGGGACAGGTTGAAAGCAGATAATGTATTTCCCAACAAAACTTTGGCTAACTTGTTGGTTCAAGTTGATGGATTTAAGAAGACTCAAGCTTCCGATTTGCTTGATTGA 1872 0.4097 MWALRRASLSLRNKSFNVRVSSVKLLPNTSVEDESGVFDSPKMVCAKCGFSSMNLCYCSGSNSGHGFLKFSLGRLGFSSEAGAKTTKEEDDDLEDGFSELETPLGEESEKGVVSDSEDSDESDESEITGPHNELELPLSHDVDEVSTGKRSSRKRADSELFKAIMNGTGPTIYTALEKWVEDGKELSREEISLTMINLRRRKIYLKALQLSEWLESKKHLEFVERDYASQLDLIAKLHGLHKAEVYIEKIPESFRGEIIYRTLLANCVTQNNLKKAEEIFNKMKDLEFPLTPFACNQLLLLYKRTDKKKIADVLLLMEQENVKPSPLTFKILIDVKGQSNDIDGMDQIVDQMRAEGIEPDNYTKAVLVGHYISGGHDDKAKMLLKEMEGENLKENRWVCRLLLALYAKLGMADEVGRVWKVCETRPSVEDCVAAIEAWGKLKKIDEAEAVFEVMARKWKLTSKNCSVLLNVYANNKMLTKGKDLIKRMAHKGCRIGPLTWNALVKLYVQAGEVEKADSVLQKAIQQSPVRPIFSSYNTLLEEYSKRGDIHNSEKIFYRMKQAGYISRLKQYQILIEAYRRANVPAYGIRDRLKADNVFPNKTLANLLVQVDGFKKTQASDLLD* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g2544 623 PANTHER OS12G0527900 PROTEIN 28 623 - -
Mtr7g2544 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 496 531 IPR002885 -
Mtr7g2544 623 MobiDBLite consensus disorder prediction 125 154 - -
Mtr7g2544 623 Pfam PPR repeat 466 493 IPR002885 -
Mtr7g2544 623 Pfam PPR repeat 535 563 IPR002885 -
Mtr7g2544 623 Pfam PPR repeat 499 522 IPR002885 -
Mtr7g2544 623 MobiDBLite consensus disorder prediction 82 154 - -
Mtr7g2544 623 SUPERFAMILY TPR-like 392 580 IPR011990 GO:0005515
Mtr7g2544 623 TIGRFAM PPR: pentatricopeptide repeat domain 328 360 IPR002885 -
Mtr7g2544 623 TIGRFAM PPR: pentatricopeptide repeat domain 259 289 IPR002885 -
Mtr7g2544 623 TIGRFAM PPR: pentatricopeptide repeat domain 535 563 IPR002885 -
Mtr7g2544 623 TIGRFAM PPR: pentatricopeptide repeat domain 499 523 IPR002885 -
Mtr7g2544 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 325 359 IPR002885 -
Mtr7g2544 623 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Mtr7g2544 623 Pfam Pentacotripeptide-repeat region of PRORP 260 419 IPR033443 -
Mtr7g2544 623 PANTHER OS01G0280400 PROTEIN 28 623 - -
Mtr7g2544 623 ProSiteProfiles TPR repeat profile. 497 530 IPR019734 GO:0005515
Mtr7g2544 623 Gene3D Tetratricopeptide repeat domain 256 432 IPR011990 GO:0005515
Mtr7g2544 623 Gene3D Tetratricopeptide repeat domain 433 620 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g2544 Mtr-Chr7 42048141 42051485 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g2544 174 563 EF-hand Containing Proteins AT1G02150 26.303 2.92e-35 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g2544 - - mtr:MTR_7g089770 1201.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g2544 7 42048141 42051485 Mtr1g3349 1 44632016 44632798 ECH
Mtr7g2544 7 42048141 42051485 Mtr7g2544 7 42048141 42051485 ECH