Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g1603 ATGTGGGCTCTTCGCAGAACTTCTGTTCGCCTCACCTTAAGAAACCAAGGGCTTAATAATAACAATTCTGGAATTTCTCGTGCCGCTTCTGTCAAATTAATTCCAAACACTTCAGAGGAGGCTGTTCCTGTTCCTGTTCCTGATTCTCATGCTCGATTTCTGTCAACGAACCTACACACTCCTCATGCTTCCCACAGATTTACTTTCACCACCCGTGAACTTTCGTCACAGGCTGATGCTAGCAGCCAAAAAGAGGATGATGCTGATGATAATGATGACATGGAGATTGAAGATCGATTGACTGAGCCAGATGCAGACGGAGATAGCCGTGACACTGCTGAAATAGACATCAATGAGCTGGAGTTGTCGGATACTGAGACTGATTCATCCGACAAAAAATCATTTTCTTCAAGGAGACGGTCAGAACTATTCAAGGCCATTGTAAGTGTTTCAGGTTTGTCAGTTGATTCTGCTCTCGACAAGTGGGTTGAAAAAGGTAAAGAATTAAGCAGGCAGGAGATTGGGTTGGCATTAAATAGTCTTCGAAGGCGTAAAATGTATGGAAGGGCTTTGCAGGCCTTGGATTGGCTAGAGTCAAACAAAAAGCTTGAATTTACTGAGAAAGAGTATGCTTCTAAACTTGATTTGATTGCCAAATTGCGTGGCCTACCAAAGGCAGAAAAATACCTCGAGCATGTTCCAAATTCTTTCAGAGGAGAATTATTATACAGAACATTACTAGCTAACTGTGCTAGTCTGGAAAATTTGAGGAAAACGGAGGAAACATTCAACAAAATGAGGGAGTTAGGTTTTCCTGTTACAGCATTTGCTTGCAATCAGTTGCTTCTCATTTATAAGAAGATTGACAAGAAGAAAATAGCTGACGTGTTACTTATGATGGAAAAGGAGAATGTCAAACCTTCTTCTTATACTTACAAAATTTTAATAGACGTGAAGGGCCTGTCTAATGATATTGATGGGATGTCTCAAATTGTTGAGACAATGAAGGCAGAAGGTTGTGAACTAGACCATCTAACACGGGCATCCTTGGCCAGGCATTATGCCGCAGCTGGGCTTACCGAAAAAACTGAAGCTATATTGAAGGAGATTGAAGGTGAAAACTTAAAAGAGAATATGTGGGTATGCCCAACTTTGCTTCGCCTTTATGCAATTCTGGGTAGGGCTGATGAAGTGGAGAGAATTTGGAAGGTTTGTGAGTCAAAGCCACGGGTTGAGGACTGCCTTGCCGCAATTGAAGCTTGGGGAAGATTGAAGAAAATTGAAGAAGCAGAGGCAGTTTTTGAGATGATGTCAAATAAATGGAAACTTACTGCCAGGAATTACGAATCACTCCTGAAAATTTATATAAGGCATAAGATGCTAAACAAGGGTAAGGATCTTATTAAGACAATGGGAGATAGTGGATGCACAATAGGTCCAACAACCTGGGATGCACTTGTGTCTCTTTATGTTCAAGCAGGGGAAGTCGAAAAGGCAGACACTGTTTTGCAGAAGGCACTACAGCAAAATAAGATGAAGCCAATGTTTACTACTTTTATGACTATTATGGAGCAGTATGCAAAGAGGGGCGACGTCCATAATGCAGAGAAGATTTTCTATAGATTGAGACAAGCTAATTATATTTCTAGAATATCTCCGTTCCATGCTCTAGCACAGGCTTATAAAAACGCCAAACTACCGGCATATGGGATCAGGGAGAGGATGAAAGCTGATAACCTATTCCCCAACAAAGCTTTGGCTGACCAGTTGGTGCAAGTTGATCCGTTTAGGAAAACTCCAGTTTCTGATTTGCTTGATTGA 1821 0.4135 MWALRRTSVRLTLRNQGLNNNNSGISRAASVKLIPNTSEEAVPVPVPDSHARFLSTNLHTPHASHRFTFTTRELSSQADASSQKEDDADDNDDMEIEDRLTEPDADGDSRDTAEIDINELELSDTETDSSDKKSFSSRRRSELFKAIVSVSGLSVDSALDKWVEKGKELSRQEIGLALNSLRRRKMYGRALQALDWLESNKKLEFTEKEYASKLDLIAKLRGLPKAEKYLEHVPNSFRGELLYRTLLANCASLENLRKTEETFNKMRELGFPVTAFACNQLLLIYKKIDKKKIADVLLMMEKENVKPSSYTYKILIDVKGLSNDIDGMSQIVETMKAEGCELDHLTRASLARHYAAAGLTEKTEAILKEIEGENLKENMWVCPTLLRLYAILGRADEVERIWKVCESKPRVEDCLAAIEAWGRLKKIEEAEAVFEMMSNKWKLTARNYESLLKIYIRHKMLNKGKDLIKTMGDSGCTIGPTTWDALVSLYVQAGEVEKADTVLQKALQQNKMKPMFTTFMTIMEQYAKRGDVHNAEKIFYRLRQANYISRISPFHALAQAYKNAKLPAYGIRERMKADNLFPNKALADQLVQVDPFRKTPVSDLLD* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g1603 606 MobiDBLite consensus disorder prediction 103 117 - -
Mtr1g1603 606 Pfam PPR repeat 482 505 IPR002885 -
Mtr1g1603 606 Pfam PPR repeat 448 476 IPR002885 -
Mtr1g1603 606 Pfam PPR repeat 518 545 IPR002885 -
Mtr1g1603 606 Pfam PPR repeat 418 439 IPR002885 -
Mtr1g1603 606 SUPERFAMILY TPR-like 341 545 IPR011990 GO:0005515
Mtr1g1603 606 MobiDBLite consensus disorder prediction 72 135 - -
Mtr1g1603 606 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 514 IPR002885 -
Mtr1g1603 606 PANTHER OS12G0527900 PROTEIN 25 606 - -
Mtr1g1603 606 PANTHER DNA-BINDING PROTEIN 25 606 - -
Mtr1g1603 606 Gene3D Tetratricopeptide repeat domain 239 414 IPR011990 GO:0005515
Mtr1g1603 606 Gene3D Tetratricopeptide repeat domain 415 598 IPR011990 GO:0005515
Mtr1g1603 606 Pfam Pentatricopeptide repeat domain 264 319 IPR002885 -
Mtr1g1603 606 MobiDBLite consensus disorder prediction 85 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g1603 Mtr-Chr1 20233443 20238322 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g1603 153 546 EF-hand Containing Proteins AT1G02150 25.061 1.17e-34 136
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g1603 - - mtr:MTR_1g050750 1004.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g1603 1 20233443 20238322 Mtr1g3349 1 44632016 44632798 ECH
Mtr1g1603 1 20233443 20238322 Mtr1g1603 1 20233443 20238322 ECH