Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr1g3117 ATGAAGCACTCTCCTATTTTAACACTATTATTCTCTTTATATTTTCTTACTTCATTTCTTTCTATCCAAGCTAGACACCATTTCCATACAAAACACAAGCATTACTCACATTCTCATAATTCATCATCTGAAATTTCACTTCCTCCTGCTCCACTACCTTCACCAACTAGTAGTGCTCCTGAAGAAGCTCCTAGTGCTAGTGCTAGTCCTAGCCCTAGCCCTGAAGTAGCATCTGGCTTATTGGATGTAAGAAAATTTGGTGCCATTGGAGATGGAATAACTGATGATACTGAGTCATTTAAAATGGCATGGGACACTGCTTGTCAAAGTGAATTAGATCTTAATGTTATATTTGTTCCTCCTGGTTTCTCCTTCATTGTTCAATCTACTATTTTCACTGGTCCTTGTAAAGGTGGTTTGGTATTAAAGGTTGATGGAACTATTATGACACCTGATGGACCTGAATCATGGCTAAAAAACAACAGTAGGCGTCAATGGTTGGTCTTTTATAGAGTCAATGGCATGTCACTTGAAGGAAGTGGTACAATTGATGGCAGAGGACAAAAATGGTGGGACCTCCCTTGTAAGCCTCATAAGGGGCCTAATGGAACAACATTACCAGGACCTTGTGACAGCCCAGTTGCTATAAGGTTTTTTATGAGTTCAAATTTGACTGTACAAGGACTTAGGATAAAAAACAGTCCTCAATTCCATTTCAGATTTGATGGCTGCCAAAGTGTGCATGTGGAATCAATTTTCATAACAGCTCCAGCACTTAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGATGTGAAAATATATAATTCCGTAGTTTCCAATGGTGATGACTGTGTTTCCATTGGGTCTGGTTGCTATGATGTTGATATAAAAAATATCACATGTGGACCAGGTCATGGCATTAGCATTGGTAGTTTGGGAAACCACAACTCAAGAGCATGTGTATCAAACATAACAGTGAGGGACTCAGTTATAAGGGTATCAGATAATGGGGTAAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTAACATTCAGTAATATTCACATGGATACAGTAAAAAATCCTATTATAATTGACCAATTTTACTGCCTCAGTAAAGATTGCAGCAACAAAACCTCTGCAGTATTTGTATCAGATATAGTTTACACAAGCATAAAGGGAACTTATGATATAAGACACCCTCCTATGCATTTTGCATGCAGTGACTCAATCCCTTGCACCAACTTGACTCTCTCAGATATTGAGCTTCTTCCTTCTCAAGGAGATATGTTGAATGATCCTTTTTGTTGGAATGCTTATGGAAATTCAGAGACATTAACCATTCCTCCAGTATTTTGCTTGTTGGATGGTATTCCTCAGTCTATTCCAGCCAATGATATTGATCATTGCTGA 1434 0.3856 MKHSPILTLLFSLYFLTSFLSIQARHHFHTKHKHYSHSHNSSSEISLPPAPLPSPTSSAPEEAPSASASPSPSPEVASGLLDVRKFGAIGDGITDDTESFKMAWDTACQSELDLNVIFVPPGFSFIVQSTIFTGPCKGGLVLKVDGTIMTPDGPESWLKNNSRRQWLVFYRVNGMSLEGSGTIDGRGQKWWDLPCKPHKGPNGTTLPGPCDSPVAIRFFMSSNLTVQGLRIKNSPQFHFRFDGCQSVHVESIFITAPALSPNTDGIHIENTNDVKIYNSVVSNGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIRVSDNGVRIKTWQGGSGSVSGVTFSNIHMDTVKNPIIIDQFYCLSKDCSNKTSAVFVSDIVYTSIKGTYDIRHPPMHFACSDSIPCTNLTLSDIELLPSQGDMLNDPFCWNAYGNSETLTIPPVFCLLDGIPQSIPANDIDHC* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr1g3117 477 Pfam Glycosyl hydrolases family 28 114 431 IPR000743 GO:0004650|GO:0005975
Mtr1g3117 477 Gene3D - 66 459 IPR012334 -
Mtr1g3117 477 MobiDBLite consensus disorder prediction 59 74 - -
Mtr1g3117 477 SUPERFAMILY Pectin lyase-like 73 463 IPR011050 -
Mtr1g3117 477 SMART pbh1 353 374 IPR006626 -
Mtr1g3117 477 SMART pbh1 221 270 IPR006626 -
Mtr1g3117 477 SMART pbh1 294 314 IPR006626 -
Mtr1g3117 477 SMART pbh1 324 345 IPR006626 -
Mtr1g3117 477 SMART pbh1 271 292 IPR006626 -
Mtr1g3117 477 ProSitePatterns Polygalacturonase active site. 301 314 IPR000743 GO:0004650|GO:0005975
Mtr1g3117 477 MobiDBLite consensus disorder prediction 33 76 - -
Mtr1g3117 477 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 467 - -
Mtr1g3117 477 PANTHER - 9 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr1g3117 Mtr-Chr1 42449591 42452274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr1g3117 78 477 Glycoside Hydrolase AT1G02460 72.953 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr1g3117 - - gmx:100792285 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3117 1 42449591 42452274 Mtr1g3117 1 42449591 42452274 ECH
Mtr2g1162 2 12399647 12406576 Mtr1g3117 1 42449591 42452274 ECH
Mtr7g3513 7 52116235 52119619 Mtr1g3117 1 42449591 42452274 PCT