Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr2g1162 ATGAGTCTCATTCATGGAATTTTTATCCTATGGATAACAATGATTCTTTTCATCCATAATGTGGAAGGAAGGTACCATCACAAGAAACCAAAGAAAACTTCCCCTGCACCTAGTGACCCTTCACCACCATCTCCTAGTTTTCCCTCTGATCCATATCCATATCCAAATGATCCTGGAGAATCTCCTTCTAACTGCGTTTTCGATGTAAGATCATTCGGAGCAGTTGGAGACGGTGATGCTGATGATACAGCCGCATTTAGAGCAGCATGGAAAGCAGCTTGTGCAGTTGATTCAGGAGTTCTTTTAGCTCCTGAAAATTACTGTTTTAAAATCACTTCTACTATCTTTTCAGGTCCATGCAAACCAGGACTAGTTTTTCAAATTGATGGTACTTTGATGGCACCAGATGGACCAAATTGTTGGCCAGAGGCAGACAGTAAAAGCCAATGGCTTGTGTTTTATAGACTTGATCAAATGACTCTAAATGGGACTGGAATTATTGAAGGCAATGGAGAACAATGGTGGGATCTTCCTTGCAAACCTCATAGGAGTCCAGATGGAAAAACTGTATCAGGACCATGTGTTAGCCCTACAATGATAAGGTTCTTCATGAGCTCAAATTTGGTGTTAAGAGGGTTGAAAATACAAAATAGTCCTCAATTCCATGTGAAATTTGATGGTTGTCAAGGAGTATTAATTGATGAATTGTCCATTTCTGCACCTAAACTTAGTCCCAATACTGATGGAATCCACTTAGGAAACACAAGGGATGTTGGAATATATAATTCCTTGATAAGCAATGGTGATGATTGCATTTCAATTGGTCCTGGTTGTTCAAATGTAAATGTGGATGGTGTTACTTGTGCTCCTACCCACGGAATTAGCATTGGAAGCCTTGGAGTACACAACTCTCATGCATGTGTCTCAAACCTAACAGTCCGAAACTCAATCATAAAAGAATCAGACAATGGACTAAGAATCAAAACATGGCAAGGTGGTACAGGATCAGTAACAGGTTTAACATTTGACAACATCCAAATGGAGAATGTAAGAAACTGTATCAACATAGACCAATTCTACTGTTTATCAAAAGAGTGTATGAACCAAACATCAGCAGTATATGTAAACAATATCTCCTACAGAAAAATAAAGGGTACATATGATGTGAGAACACCTCCTATACATTTTGCTTGTAGTGACACTGTTGCTTGCACAAACATAACACTCTCTGAGATTGAACTTTTGCCTTATGAAGGTGAATTAGTTGATGACCCTTTTTGTTGGAATGCTTATGGAAGACAAGAGACTTTGACTATTCCTCCACTTGATTGTTTAAGGGAAGGTCAGCCTGAAACTGTTGTGGAGTTATCTGAATATGAATGCAATAATTAA 1392 0.3865 MSLIHGIFILWITMILFIHNVEGRYHHKKPKKTSPAPSDPSPPSPSFPSDPYPYPNDPGESPSNCVFDVRSFGAVGDGDADDTAAFRAAWKAACAVDSGVLLAPENYCFKITSTIFSGPCKPGLVFQIDGTLMAPDGPNCWPEADSKSQWLVFYRLDQMTLNGTGIIEGNGEQWWDLPCKPHRSPDGKTVSGPCVSPTMIRFFMSSNLVLRGLKIQNSPQFHVKFDGCQGVLIDELSISAPKLSPNTDGIHLGNTRDVGIYNSLISNGDDCISIGPGCSNVNVDGVTCAPTHGISIGSLGVHNSHACVSNLTVRNSIIKESDNGLRIKTWQGGTGSVTGLTFDNIQMENVRNCINIDQFYCLSKECMNQTSAVYVNNISYRKIKGTYDVRTPPIHFACSDTVACTNITLSEIELLPYEGELVDDPFCWNAYGRQETLTIPPLDCLREGQPETVVELSEYECNN* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr2g1162 463 SMART pbh1 337 358 IPR006626 -
Mtr2g1162 463 SMART pbh1 255 276 IPR006626 -
Mtr2g1162 463 SMART pbh1 228 254 IPR006626 -
Mtr2g1162 463 SMART pbh1 278 298 IPR006626 -
Mtr2g1162 463 SMART pbh1 308 329 IPR006626 -
Mtr2g1162 463 MobiDBLite consensus disorder prediction 28 55 - -
Mtr2g1162 463 PANTHER - 4 452 - -
Mtr2g1162 463 SUPERFAMILY Pectin lyase-like 64 460 IPR011050 -
Mtr2g1162 463 MobiDBLite consensus disorder prediction 35 55 - -
Mtr2g1162 463 Gene3D - 58 455 IPR012334 -
Mtr2g1162 463 PANTHER POLYGALACTURONASE PLANT-LIKE PROTEIN 4 452 - -
Mtr2g1162 463 Pfam Glycosyl hydrolases family 28 104 414 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr2g1162 Mtr-Chr2 12399647 12406576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr2g1162 1 461 Glycoside Hydrolase AT1G48100 68.134 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr2g1162 - - gmx:100785528 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g1162 2 12399647 12406576 Mtr2g1162 2 12399647 12406576 ECH
Mtr2g1162 2 12399647 12406576 Mtr1g3117 1 42449591 42452274 ECH