Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr7g3513 ATGAAGCATTCTTATATTTTACCAGTAGCATTCTGTGTAGTTTTTCTTACTTTATCCCTTTTAGTTCAAGCTAGACACCATCATTCACATAAAAAACATAAGCATTCACATTCACATTCACATAAATCATATGAAACTTCACCACCACAGCCACCTCCTCTTCATGATGATTACTACAATAATAATGCCTCTGGCATTTTTGATGTAAGATCATTTGGTGCAATTGGAGATGGAATAGAAGATGATACAGAATCATTTAAGATGGCATGGGACACTGCATGCCAAAATGGATCAGATGTTAATGTTATCCTTGTTCCTCAAGGTTTCTCCTTCGTCATTCAGTCGACTATCTTCACTGGTCCTTGTCAAGGTGACTTAATATTCAAGGTGGATGGCACTGTTTTGGCACCTGATGGACCTGAATCTTGGCCAAAGAACAACAGTAGGCGACAGTGGCTGGTTTTTTACAGAATGAAGGGAATGTCACTAGAAGGAAGTGGTTCAATTGATGGAAGAGGACAAAAATGGTGGGACCTACCTTGTAAGCCTCACAAGGCCATAAGGTTTTTTATGAGTTCTAACTTGACTGTGAAAGGACTTAAGGTGAAGAACAGCCCTCAGTTCAATTTCAGATTTGATGCCTGCAATAATGTCCATATAGAATCAATTTATATCACAGCTCCAAAAATAAGCCCCAACACCGATGGGATTCACTTAGAATATGCCAATGATGTGAAAATATATAATTCTGTGATTTCCAATGGTGATGACTGTGTGTCCATTGGAACCGGGAGCTATGATGTTGATATAAAGAACATTACTTGTGGACCTAGTCATGGAATTAGCATAGGTAGTCTAGGAAATCACAACACGAAAGCATGTGTATCAAACATTACAGTGAGAGACTCGATCATAAAAATGTCAGATAATGGAATCAGAATCAAGACATGGCAAGGAGGATCAGGGTCAGTTTCAGGAGTAACATTCAATAATATTCACATGATTAGTGTAAGAAATCCAATCATAATTGACCAATACTATTGCCTAACCAAAGATTGTACCAACAAAACCTCAGCAGTATCTGTATCAAACATTCTTTACACAAACATCAAAGGAACTTATGATATAAAAAGCCCTCCTATGCATTTTGCTTGTAGTGACTCTGTCCCTTGCACTAACATAACACTCTCAGAAATTGAGCTTCTTCCTTCTCAAGGAGATATTGTCCATGATCCTTTTTGTTGGAATGCTTATGGAGATTTAGAGACATTAACTATTCCACCAGTTTCTTGTTTGCTAGAAGGCATTCCTCAGTCTTTGTTAGACTATGATATAGGTCATTGCTGA 1347 0.3779 MKHSYILPVAFCVVFLTLSLLVQARHHHSHKKHKHSHSHSHKSYETSPPQPPPLHDDYYNNNASGIFDVRSFGAIGDGIEDDTESFKMAWDTACQNGSDVNVILVPQGFSFVIQSTIFTGPCQGDLIFKVDGTVLAPDGPESWPKNNSRRQWLVFYRMKGMSLEGSGSIDGRGQKWWDLPCKPHKAIRFFMSSNLTVKGLKVKNSPQFNFRFDACNNVHIESIYITAPKISPNTDGIHLEYANDVKIYNSVISNGDDCVSIGTGSYDVDIKNITCGPSHGISIGSLGNHNTKACVSNITVRDSIIKMSDNGIRIKTWQGGSGSVSGVTFNNIHMISVRNPIIIDQYYCLTKDCTNKTSAVSVSNILYTNIKGTYDIKSPPMHFACSDSVPCTNITLSEIELLPSQGDIVHDPFCWNAYGDLETLTIPPVSCLLEGIPQSLLDYDIGHC* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr7g3513 448 Gene3D - 55 431 IPR012334 -
Mtr7g3513 448 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 6 438 - -
Mtr7g3513 448 PANTHER - 6 438 - -
Mtr7g3513 448 SUPERFAMILY Pectin lyase-like 64 436 IPR011050 -
Mtr7g3513 448 MobiDBLite consensus disorder prediction 29 55 - -
Mtr7g3513 448 Pfam Glycosyl hydrolases family 28 100 402 IPR000743 GO:0004650|GO:0005975
Mtr7g3513 448 ProSitePatterns Polygalacturonase active site. 272 285 IPR000743 GO:0004650|GO:0005975
Mtr7g3513 448 SMART pbh1 295 316 IPR006626 -
Mtr7g3513 448 SMART pbh1 215 241 IPR006626 -
Mtr7g3513 448 SMART pbh1 324 345 IPR006626 -
Mtr7g3513 448 SMART pbh1 192 214 IPR006626 -
Mtr7g3513 448 SMART pbh1 242 263 IPR006626 -
Mtr7g3513 448 SMART pbh1 265 285 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr7g3513 Mtr-Chr7 52116235 52119619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr7g3513 61 448 Glycoside Hydrolase AT1G02460 68.473 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr7g3513 - - gmx:100778836 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g3513 7 52116235 52119619 Mtr1g3117 1 42449591 42452274 PCT