Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g03915 ATGTCTTCTGCTGGTGTAACTACTCTGAGTCCTGTTTCAAGGGAGAAATTGTTGTCTCCAACCAATGGATTTTGTAATCCACTGCACTTGTCTTCGAATCTTCATGATTTTATTTTCGTTTATCTTTCGTATTCGGGGTCTTTGTCTCCGATGCGTGTGCTACCTTCGGATACGATTGAGTCAGTGAAACTCAAAATTCAAAGGAATGAAGGGGTGACAAACAAACAGAAGTTGGTTTGTAATGGGCGAGAGTTGTCACGTAGCAATTCTTTGCTCAAGGATTATGGAGTTACGGAAGGAAATGTTTTGCATTTGGTGATTCGACTGGCAGATCTACAGACCATCAGTGTGAGAACTTGTTCCGGGAAGGAGTATACCTTTCAGGTTGAAAGGTGTAAGGATGTTTGGTATGTTAAGAAACAGATTGCCGAAAAGGAAAATGAGTTTGCTGATCCTGAACAGCAGGAGGTTGTGTGTAACGGGGAGCTGCTTGATGATCAGAAGCTTATTGATGATATCTGTAGCAATTATAATGATGCAGTGATACATCTTTTTGTTAGAACAAAATATGCAGATGTTAGTACAGGGCTTGATGAGTTGTCTATTGAAGCAAAAGAATTGAATGATACGAAGAATTCTGATGCTAAGGAAGCTGATTACGGGAGGAAATATGATAGCAAAGAAGATGCGAGAAAGGAGTATGAAGCCATCGAACGAATTATGTCGAGAAAAGCTCCTGGTGGAGGTCTTGTTTTGGAGCCGGTTATTGTTAACCCTAAAGTTGAACTAGCTTCAGAGGTTTGGGATATGATAAACACTACATATGATGGGCTAGATAGTGGTAATTCTCCAATCAGATCTGCAGAGGGTACGGGTGGGGCTTACTTTATGCTCGACTCAACAGGGCAAAAATATGTATCGGTTTTCAAGCCTATGGATGAAGAGCCGATGGCTGTGAATAACCCTAGAGGCTTACCTTTGTCGTTAGACGGCGAGGGCTTAAAAAAGGGTACAAGAGTTGGCCAAGGAGCTTTCAGGGAAGTTGCTGCTTATATTTTGGATCATCCAATCAGTGGCCGCCGATCATTATTTGGTGATGAGAAAGGATTTGCTGGTGTTCCTCCGACTGTTATGGCAAAGTGCTTGCACAAAGCATTTAACCATCCAGAGGGTTTGACTGCTAAGTTTGGTTCCTTGCAAATGTTCGTGGAGAATAATGGAAGTTGTGAGGATATGGGACCTGGCGCTTTCCCGGTGAAGGAAGTGCATAAAATTACTGTGCTGGACATGAGACTTGCAAATGCAGATAGGCATGCTGGGAATATTTTACTTGGCAAAGAGAAGAAAAATGGCCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCCTTCCCACTAGTTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCTCAAGCTCGCCAGCCATACTCTCCAGAGATCATTGACTACATAAAGTCTCTTGATGCTGAAGAAGATATTGCCCTTCTGAAGTTTCATGGATGGGATCTGCCACTCGAATGCGCCCGCACTCTTCGAATCTCGACCATGCTTCTGAAAAAAGGTGTGGGGAAAGGGATGACCCCTTTTGCCATTGGAAGCCTGATGTGCCGAGAATCATTGAACAAAGAGTCTGTGATTGAAGGAATTTTTAAAGCAGCACTTGATTCTGTTCTTCCTGGAACTAGTGAGGCTACTTTTATGGATGCTGTTTCTGAGATTATGGACCAGCACCTTGATGAGATCACCAGCAATTATAATTCTTGA 1791 0.426 MSSAGVTTLSPVSREKLLSPTNGFCNPLHLSSNLHDFIFVYLSYSGSLSPMRVLPSDTIESVKLKIQRNEGVTNKQKLVCNGRELSRSNSLLKDYGVTEGNVLHLVIRLADLQTISVRTCSGKEYTFQVERCKDVWYVKKQIAEKENEFADPEQQEVVCNGELLDDQKLIDDICSNYNDAVIHLFVRTKYADVSTGLDELSIEAKELNDTKNSDAKEADYGRKYDSKEDARKEYEAIERIMSRKAPGGGLVLEPVIVNPKVELASEVWDMINTTYDGLDSGNSPIRSAEGTGGAYFMLDSTGQKYVSVFKPMDEEPMAVNNPRGLPLSLDGEGLKKGTRVGQGAFREVAAYILDHPISGRRSLFGDEKGFAGVPPTVMAKCLHKAFNHPEGLTAKFGSLQMFVENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILLGKEKKNGQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIKSLDAEEDIALLKFHGWDLPLECARTLRISTMLLKKGVGKGMTPFAIGSLMCRESLNKESVIEGIFKAALDSVLPGTSEATFMDAVSEIMDQHLDEITSNYNS 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g03915 596 Pfam Ubiquitin family 115 188 IPR000626 GO:0005515
Mepo1g03915 596 Pfam Ubiquitin family 44 109 IPR000626 GO:0005515
Mepo1g03915 596 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 48 562 IPR044571 -
Mepo1g03915 596 ProSiteProfiles Ubiquitin domain profile. 38 108 IPR000626 GO:0005515
Mepo1g03915 596 SMART ubq_7 113 187 IPR000626 GO:0005515
Mepo1g03915 596 SMART ubq_7 38 108 IPR000626 GO:0005515
Mepo1g03915 596 Gene3D - 113 195 - -
Mepo1g03915 596 SUPERFAMILY Ubiquitin-like 26 109 IPR029071 -
Mepo1g03915 596 PRINTS Ubiquitin signature 47 67 IPR019956 -
Mepo1g03915 596 PRINTS Ubiquitin signature 89 110 IPR019956 -
Mepo1g03915 596 CDD Ubl_ubiquitin_like 115 185 - -
Mepo1g03915 596 SUPERFAMILY Protein kinase-like (PK-like) 428 593 IPR011009 -
Mepo1g03915 596 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 281 574 IPR000403 -
Mepo1g03915 596 Gene3D - 36 112 - -
Mepo1g03915 596 ProSiteProfiles Ubiquitin domain profile. 113 172 IPR000626 GO:0005515
Mepo1g03915 596 SUPERFAMILY Ubiquitin-like 108 188 IPR029071 -
Mepo1g03915 596 Coils Coil 197 217 - -
Mepo1g03915 596 Pfam Phosphatidylinositol 3- and 4-kinase 290 539 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g03915 Mepo-Chr1 45473009 45476197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g03915 33 593 Acyl Lipid Metabolism Gene Families AT5G24240 56.567 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo1g03915 - - gmx:100815111 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo1g03915 1 45473009 45476197 Mepo3g06541 3 79385897 79389748 ECH
Mepo1g03915 1 45473009 45476197 Mepo1g03915 1 45473009 45476197 ECH
Mepo5g00270 5 2376888 2380146 Mepo1g03915 1 45473009 45476197 ECH
Mepo3g04217 3 51173389 51175452 Mepo1g03915 1 45473009 45476197 PCT