Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g4484 ATGAGCTGGTCTGGAGGAGATTGGATGTGTGGTGCTTGCGAGCACATAAATTTCAAGAAGAGGGAAGCATGTCAAAGTTGTGGTTACCCCAAGTACGGAGGCCCTGACCCGTCAACCTATAGATATAGCAGGACAGAAACGTTGGCAGGGGACTGGTTTTGCACCGCTATGAACTGTGGAGCTCACAACTATGCAAGCCGATCAAACTGCTATAGATGTGGTGCATATAAAGATTATTCTTCTGGATATGGGGGTAACATGGCGGGTTCTGGAGGATACGGATCTGATTGCAGTTCTCCCCCAGGATGGAAAAGTGGAGACTGGATTTGCCCTAGAATTGGCTGTGGAATGCATAATTATGCTAGCAGGACAGAATGCTACAAATGCAAAATGTCAAGGGATTATGGTGGTGCAGACTAA 420 0.469 MSWSGGDWMCGACEHINFKKREACQSCGYPKYGGPDPSTYRYSRTETLAGDWFCTAMNCGAHNYASRSNCYRCGAYKDYSSGYGGNMAGSGGYGSDCSSPPGWKSGDWICPRIGCGMHNYASRTECYKCKMSRDYGGAD* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g4484 139 ProSitePatterns Zinc finger RanBP2-type signature. 52 73 IPR001876 -
Mal5g4484 139 SMART zf_4 106 132 IPR001876 -
Mal5g4484 139 SMART zf_4 50 76 IPR001876 -
Mal5g4484 139 SMART zf_4 6 30 IPR001876 -
Mal5g4484 139 ProSitePatterns Zinc finger RanBP2-type signature. 108 129 IPR001876 -
Mal5g4484 139 PANTHER ZINC FINGER, RANBP2-TYPE-RELATED 1 136 - -
Mal5g4484 139 SUPERFAMILY Ran binding protein zinc finger-like 44 79 IPR036443 -
Mal5g4484 139 Pfam Zn-finger in Ran binding protein and others 6 32 IPR001876 -
Mal5g4484 139 Pfam Zn-finger in Ran binding protein and others 104 130 IPR001876 -
Mal5g4484 139 Pfam Zn-finger in Ran binding protein and others 49 76 IPR001876 -
Mal5g4484 139 ProSiteProfiles Zinc finger RanBP2 type profile. 104 135 IPR001876 -
Mal5g4484 139 ProSitePatterns Zinc finger RanBP2-type signature. 8 27 IPR001876 -
Mal5g4484 139 ProSiteProfiles Zinc finger RanBP2 type profile. 4 33 IPR001876 -
Mal5g4484 139 ProSiteProfiles Zinc finger RanBP2 type profile. 48 79 IPR001876 -
Mal5g4484 139 PANTHER ZINC FINGER PROTEIN 1 136 - -
Mal5g4484 139 SUPERFAMILY Ran binding protein zinc finger-like 3 34 IPR036443 -
Mal5g4484 139 SUPERFAMILY Ran binding protein zinc finger-like 99 135 IPR036443 -
Mal5g4484 139 Gene3D - 99 135 - -
Mal5g4484 139 Gene3D - 42 78 - -
Mal5g4484 139 Gene3D - 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g4484 Mal-Chr5 116895000 116896187 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g4484 - - gmx:100792208 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g4484 5 116895000 116896187 Mal7g0109 7 2639562 2640855 ECH
Mal5g4484 5 116895000 116896187 Mal2g0861 2 9980172 9980924 ECH
Mal5g4484 5 116895000 116896187 Mal5g4484 5 116895000 116896187 ECH
Mal5g4484 5 116895000 116896187 Mal4g2358 4 59359921 59360764 PCT