Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g3327 ATGTCACTGTTCTCACATCACAAACATTCTTCTAACCGTTTCTTCATTTTCATACTTATCCTAGCTTTCAAAGGGATTACAATTTCAGCAACAACATTCATGTTTGTGAACAAATGTGACCACACAGTATGGCCAGGAATTCTAGGAAAACCAGACCTCGGAACAACCGGTTTCGAACTCAAAAGAGGAAACACACAAACCTTCCAAGCACCAGCCGGTTGGTCAGGTCGATTCTGGGCCAGAACCGGTTGCAAATTCGACGATTCTGGCCCCGGAACCTGCTCAACCGGCGACTGCGGTTCAGGAGAAATTAACTGCAATGGTAACGGCGCAACACCACCAGCAACACTTGCAGAATTCACTCTAGGAAATAGTTCACCCGATTACTACGATGTTAGTCTCGTAGACGGTTACAATCTTCCTGTGATGGTCGAAACTAGTGGCGGTTCAGGTTCATGTGAGGCCACTGGCTGTGGAGAGGATCTTAACCGGAGATGTCCTTCGGAGTTGAGAGTGGATGGTGGTGACGCGTGTAATAGCGCCTGTGGCGCGTTTGGGACACCGGAGTATTGTTGTAGTGGCGCGTTTAGTTCGCCTTCGAGTTGTACACCGTCGGTGTATTCGGAAATGTTTAAATCTGCTTGTCCAAAATCTTATAGCTATGCTTTTGATGATGCTACAAGCACTTTTACTTGTACTGCTGCTGAAGATTATACTATAACATTTTGTCCTTCTTCTTCTCCAAGTTTGAAGTCTTTGATGGAGTCCAAGCCAGGATCATCAGTAGAGCAAGCTGCAGTAGCTACTAAATCTTGGATAGCCAATTTGGCTACAGGAGATTCCACCAGAATAAACCAAACATTTTCAACTTCCATGTCTATATTTTTTGTGATCCTTTTCATTCTTCATGGGTCCTTTTCCAAGTGA 927 0.4477 MSLFSHHKHSSNRFFIFILILAFKGITISATTFMFVNKCDHTVWPGILGKPDLGTTGFELKRGNTQTFQAPAGWSGRFWARTGCKFDDSGPGTCSTGDCGSGEINCNGNGATPPATLAEFTLGNSSPDYYDVSLVDGYNLPVMVETSGGSGSCEATGCGEDLNRRCPSELRVDGGDACNSACGAFGTPEYCCSGAFSSPSSCTPSVYSEMFKSACPKSYSYAFDDATSTFTCTAAEDYTITFCPSSSPSLKSLMESKPGSSVEQAAVATKSWIANLATGDSTRINQTFSTSMSIFFVILFILHGSFSK* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g3327 308 Pfam Thaumatin family 37 244 IPR001938 -
Mal5g3327 308 SUPERFAMILY Osmotin, thaumatin-like protein 31 245 IPR037176 -
Mal5g3327 308 Gene3D Thaumatin 31 244 IPR037176 -
Mal5g3327 308 CDD TLP-PA 32 243 - -
Mal5g3327 308 PANTHER OS03G0233200 PROTEIN 7 268 IPR001938 -
Mal5g3327 308 ProSiteProfiles Thaumatin family profile. 30 244 IPR001938 -
Mal5g3327 308 PANTHER PATHOGENESIS-RELATED THAUMATIN FAMILY PROTEIN 7 268 - -
Mal5g3327 308 ProSitePatterns Thaumatin family signature. 90 106 IPR017949 -
Mal5g3327 308 SMART tha2 33 244 IPR001938 -
Mal5g3327 308 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Mal5g3327 308 PRINTS Pathogenesis-related protein signature 234 243 IPR001938 -
Mal5g3327 308 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Mal5g3327 308 PRINTS Pathogenesis-related protein signature 56 65 IPR001938 -
Mal5g3327 308 PRINTS Pathogenesis-related protein signature 32 44 IPR001938 -
Mal5g3327 308 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g3327 Mal-Chr5 96736910 96738286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g3327 15 284 Receptor kinase-like Gene Family AT5G38280 41.489 6.66e-71 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal5g3327 - - gmx:100778987 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g3327 5 96736910 96738286 Mal5g3327 5 96736910 96738286 ECH
Mal6g1013 6 15130815 15132147 Mal5g3327 5 96736910 96738286 ECH
Mal6g1016 6 15184506 15186286 Mal5g3327 5 96736910 96738286 PCT