Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal1g1626 ATGAGGCACTCTTCTATTTTAACACTATTATTCTCTATATACTTTCTTACTTCATTTCTTTCTATCCAAGCTAGACACCATTTCCATACAAAACATAAGCACTACTCACATTCTCATAATTCATCATCTGAAATTTCACTACCTCCTGCTTCACTACCTTCACCATCTAGTAGGGCTCCAGAAGAAGCACCAAGTGCTCCTGAAGAAGAACCTAGCCCTGCCCCTAATAGTGATGAGAATAATAACCAAAATGTATCTGGTGTATTCAATGTACGAAAATTTGGTGCCATTGGAGATGGAGTAACTGATGATACTGAATCATTCAAAATGGCATGGGACACTGCCTGTCAAAGTGAATTAGAACTTAATGTTATATATGTTCCTCCTGGTTTCTCCTTCATTGTTCAATCTACTATCTTCACTGGTCCTTGTAAAGGTGGTTTAGTATTAAAGGTTGATGGCACTATTATGACACCTGATGGACCTGAATCTTGGCTAAAGAACAACAGTAGGCGTCAATGGTTGGTCTTTTATAGAGTCAATGGTATGTCACTTGAAGGAAGTGGTTCAATTGATGGCAGAGGACAAAAATGGTGGGACCTTCCTTGTAAGCCTCACAAGGGGCCTAATAGAACAACATTGCCAGGACCTTGTGACAGCCCAGTTGCTTTAAGGTTTTTCATGAGTTCCAATTTGACTGTACAAGGACTTAGGATAAAAAACAGCCCTCAATTCCATTTCAGATTTGATGGCTGCCAAAGTGTGCATGTAGAATCAATTTTCATAACAGCTCCAGCACTTAGCCCCAACACTGATGGAATACACATAGAAAATACCAATGATGTGAAAATATACAACTCTGTTGTTTCTAATGGTGATGACTGCGTTTCCATTGGATCTGGTTGCTATGATGTTGACATAAAAAACATCACATGTGGACCAGGTCATGGGATTAGCATTGGTAGTTTGGGAAACCACAACTCAAGAGCATGTGTATCAAACATAACAGTGAGGGACTCAGTTATAAAGTTATCAGATAATGGGGTAAGAATTAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTAACATTCAGTAATATTCACATGGATACAGTAAAAAATCCTATAATAATTGACCAATTTTACTGCCTCAGTAAAGATTGCAGCAACAAAACCTCTGCAGTATTTGTATCAGATATAGTTTACACAAGCATTAAGGGAACTTATGATATAAGACACCCTCCTATGCATTTTGCATGCAGTGACTCTGTCCCTTGCACAAACTTGACTCTCTCAGATGTTGAACTTCTTCCTGCTCAAGGAGATATGTTGAATGATCCTTTTTGTTGGAATGCTTATGGAAACTCTGAGACATTAACTATTCCTCCAGTTTTTTGCTTGTTGGATGGTATTCCTCAGTCTATTCCAGCAAATGACATTGATCATTGCTGA 1458 0.3868 MRHSSILTLLFSIYFLTSFLSIQARHHFHTKHKHYSHSHNSSSEISLPPASLPSPSSRAPEEAPSAPEEEPSPAPNSDENNNQNVSGVFNVRKFGAIGDGVTDDTESFKMAWDTACQSELELNVIYVPPGFSFIVQSTIFTGPCKGGLVLKVDGTIMTPDGPESWLKNNSRRQWLVFYRVNGMSLEGSGSIDGRGQKWWDLPCKPHKGPNRTTLPGPCDSPVALRFFMSSNLTVQGLRIKNSPQFHFRFDGCQSVHVESIFITAPALSPNTDGIHIENTNDVKIYNSVVSNGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGNHNSRACVSNITVRDSVIKLSDNGVRIKTWQGGSGSVSGVTFSNIHMDTVKNPIIIDQFYCLSKDCSNKTSAVFVSDIVYTSIKGTYDIRHPPMHFACSDSVPCTNLTLSDVELLPAQGDMLNDPFCWNAYGNSETLTIPPVFCLLDGIPQSIPANDIDHC* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal1g1626 485 Gene3D - 74 467 IPR012334 -
Mal1g1626 485 SMART pbh1 302 322 IPR006626 -
Mal1g1626 485 SMART pbh1 361 382 IPR006626 -
Mal1g1626 485 SMART pbh1 229 278 IPR006626 -
Mal1g1626 485 SMART pbh1 279 300 IPR006626 -
Mal1g1626 485 SMART pbh1 332 353 IPR006626 -
Mal1g1626 485 Pfam Glycosyl hydrolases family 28 121 438 IPR000743 GO:0004650|GO:0005975
Mal1g1626 485 MobiDBLite consensus disorder prediction 33 85 - -
Mal1g1626 485 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 8 475 - -
Mal1g1626 485 PANTHER - 8 475 - -
Mal1g1626 485 ProSitePatterns Polygalacturonase active site. 309 322 IPR000743 GO:0004650|GO:0005975
Mal1g1626 485 SUPERFAMILY Pectin lyase-like 87 471 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal1g1626 Mal-Chr1 21243454 21245911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal1g1626 77 485 Glycoside Hydrolase AT1G02460 73.058 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal1g1626 - - gmx:100792285 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal1g1626 1 21243454 21245911 Mal1g1626 1 21243454 21245911 ECH
Mal4g3634 4 107482934 107486526 Mal1g1626 1 21243454 21245911 ECH
Mal3g4727 3 127140542 127143244 Mal1g1626 1 21243454 21245911 PCT