Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal3g4727 ATGAAGCATTCTCATATTGTAGCATTAGCATTCTGTTTTGTTTTTCTTACTTTACTTCTTTTAGTTCAAGCTAGACATCATCATTCACATAAGAAACATAAGCATTCACATTCTCATAAATCATATGAAACTTCACCACCACAACCACCTCCTCCTCCTCCTCATGATGCTTACTACAATAATAATGCCTCTGGCATTTTTGATGTAAGATCATTTGGTGCCATTGGAGATGGAATAGAAGATGATACAGAATCTTTTAAGATGGCATGGGACACTGCATGCCAAAATGGATCAGATGTTAATGTTATCCTTGTTCCTCAAGGTTTCTCCTTCGTCGTCCAATCTACTATCTTCACTGGTCCTTGTCAAGGTGACTTGGTATTCAAGGTGGATGGCACTGTTATGGCACCTGATGGACCTGAATCTTGGCCAAAGAACAACAGTAGGCGACAGTGGCTGGTTTTTTACAGAATCAATGGAATGTCACTAGAAGGAAGTGGTTCAATAGATGGGAGAGGACAAAAATGGTGGGACCTACCTTGTAAGCCTCACAAGGGATCAAATGGGACAGCATTAGGACCTTGTGATAGTCCAATTGCCATAAGGTTTTTTATGAGTTCTAACTTAACTGTGAAAGAACTTAAGGTGAAGAACAGCCCTCAGTTCAATTTCAGATTTGATGCCTGCAATAAAGTCCATATAGAGTCAATTTATATTACAGCTCCAAAACTAAGCCCCAACACTGATGGAATTCACTTAGAATATGCTAATGATGTGAAAATATATAATTCTGTGATTTCCAATGGTGATGACTGTGTGTCCATTGGATCCGGGAGCTATGATGTTGATATAAAGAACATTACTTGTGGACCTAGTCATGGAATTAGCATAGGTAGTCTAGGAAATCACAACACCAAAGCATGTGTTTCAAACATTACAGTGAGAGACTCAATCATAAAAATGTCAGACAATGGAGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTTTCAGGAGTAACATTCAAAAACATTCACATGATTAGTGTAAGAAATCCAATAATAATTGACCAATACTATTGCCTAACCAAAGATTGCACCAACAAAACCTCAGCAGTATCTGTATCAAACATTCTTTACACAGACATCAAAGGAACTTATGATATAAAAAGCCCTCCTATGCATTTTGCTTGTAGTGACTCTGTCCCTTGCACTAACATAACACTCTCAGAAATTGAGCTTCTTCCATCTCAAGGAGATATTGTGCATGATCCTTTTTGTTGGAATGCTTATGGAGATTTGGAGACATTAACTATTCCACCAGTTTCTTGTTTGCTACAAGGCATTCCTCAGTCTTTGTTAGACTATGATATAGGTCATTGCTGA 1389 0.3816 MKHSHIVALAFCFVFLTLLLLVQARHHHSHKKHKHSHSHKSYETSPPQPPPPPPHDAYYNNNASGIFDVRSFGAIGDGIEDDTESFKMAWDTACQNGSDVNVILVPQGFSFVVQSTIFTGPCQGDLVFKVDGTVMAPDGPESWPKNNSRRQWLVFYRINGMSLEGSGSIDGRGQKWWDLPCKPHKGSNGTALGPCDSPIAIRFFMSSNLTVKELKVKNSPQFNFRFDACNKVHIESIYITAPKLSPNTDGIHLEYANDVKIYNSVISNGDDCVSIGSGSYDVDIKNITCGPSHGISIGSLGNHNTKACVSNITVRDSIIKMSDNGVRIKTWQGGSGSVSGVTFKNIHMISVRNPIIIDQYYCLTKDCTNKTSAVSVSNILYTDIKGTYDIKSPPMHFACSDSVPCTNITLSEIELLPSQGDIVHDPFCWNAYGDLETLTIPPVSCLLQGIPQSLLDYDIGHC* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal3g4727 462 Pfam Glycosyl hydrolases family 28 100 416 IPR000743 GO:0004650|GO:0005975
Mal3g4727 462 Gene3D - 54 446 IPR012334 -
Mal3g4727 462 ProSitePatterns Polygalacturonase active site. 286 299 IPR000743 GO:0004650|GO:0005975
Mal3g4727 462 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 6 452 - -
Mal3g4727 462 SUPERFAMILY Pectin lyase-like 63 450 IPR011050 -
Mal3g4727 462 MobiDBLite consensus disorder prediction 30 59 - -
Mal3g4727 462 SMART pbh1 256 277 IPR006626 -
Mal3g4727 462 SMART pbh1 309 330 IPR006626 -
Mal3g4727 462 SMART pbh1 229 255 IPR006626 -
Mal3g4727 462 SMART pbh1 338 359 IPR006626 -
Mal3g4727 462 SMART pbh1 279 299 IPR006626 -
Mal3g4727 462 PANTHER - 6 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal3g4727 Mal-Chr3 127140542 127143244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal3g4727 61 462 Glycoside Hydrolase AT1G02460 70.936 0.0 613
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal3g4727 - - gmx:100778836 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal3g4727 3 127140542 127143244 Mal1g1626 1 21243454 21245911 PCT