Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2767 ATGAAGAGAAGTGGAATCTGTGTGTCTTGTTTTGCATTTTACATTATCATCCTTCTTCTTGCTTCTATTCATTTCCCACTATCCCAATCCCAATCCTCTGATTTGATAGACCAAATATGCAAAAAGACACCCTTCTATGATCTCTGCATCTCAACCTTACATTCAAGCCCTCTTAGCCCAAAAACTGATCTCAAGGGGTTAGCACTTTTAATGGTGAATCAAATTGTGGCAAATGCTTCTGACACACTGAGTTACATTGAGGGGATGATCAAGAATACCAAAGATCCCAACATGGAGCAAGCCTTGGCTTTTTGTGCTGAGCTTTACATCCCAGTTGTGAAATACATTCTCCCACAAGCAGCTGATGCAATAAGCCATAACCGTTTTGTTTTTGCTAGTTACTCTGTTTCTGAAGCTATGAATGAATTGTTTTCTTGTGACAAGAAATTCTTATCAGGCTCTGCTCAGTCACCTTTAGGGGATAGAACCAGCATTGTGCAGAAGCTGGTGGAGGTGGGTGAAGCCATAATCAAACTACTACTATCCCATTACTAG 555 0.4054 MKRSGICVSCFAFYIIILLLASIHFPLSQSQSSDLIDQICKKTPFYDLCISTLHSSPLSPKTDLKGLALLMVNQIVANASDTLSYIEGMIKNTKDPNMEQALAFCAELYIPVVKYILPQAADAISHNRFVFASYSVSEAMNELFSCDKKFLSGSAQSPLGDRTSIVQKLVEVGEAIIKLLLSHY* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2767 184 CDD CIF_like 33 180 IPR034087 GO:0004857|GO:0043086
Lja6g2767 184 SMART PMEI_2 31 176 IPR006501 GO:0004857
Lja6g2767 184 TIGRFAM PME_inhib: pectinesterase inhibitor domain 11 180 IPR006501 GO:0004857
Lja6g2767 184 Gene3D Invertase/pectin methylesterase inhibitor family protein 31 181 IPR035513 -
Lja6g2767 184 PANTHER PECTINESTERASE INHIBITOR-LIKE 12 182 - -
Lja6g2767 184 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 12 182 - -
Lja6g2767 184 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 180 IPR035513 -
Lja6g2767 184 Pfam Plant invertase/pectin methylesterase inhibitor 34 172 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2767 Lja-Chr6 56775936 56776490 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2767 - - var:108342550 233.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2767 6 56775936 56776490 Lja6g2767 6 56775936 56776490 ECH
Lja4g1381 4 12352821 12353600 Lja6g2767 6 56775936 56776490 PCT
Lja6g2767 6 56775936 56776490 Lja4g1382 4 12355887 12356775 PCT