Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2742 ATGATTTTTATAAGAGGGTGTTTTATCCTATGGATTACTGTGATTCTTTTTATCCATGATTTGGATAATGTGGAAGGAAGAAACCACTATCACAAGAAGCAGAACAAAAAATCCCCTGCTCCTAAGTCCCCTGCTCATTCCCCTGCACCACCAAGTGACACTTCACCCCCTTCTTCCACTTCTCCGAGTGTTCCCTCAGACCCTTATCCGAATGATCCCGGGGATTCAGGCTGCGTATTCGACGTCATGTCCTTCGGGGCAGTTGGAGATGGTTCAGCTGATGACACGGCTGCATTCAGGGAAGCATGGAAAGCAGCTTGTGCAGTAGAGTCAGGGGTTGTTCTGGCTCCAGAAAACTACTGTTTTATGATCACTTCTACAATTTTTTCTGGTCCATGCAAGCCAGGACTTGTATTTCAAGTGGAAGGTACTCTCATGGCACCAGATGGACCAGATTCTTGGCCTAAAGCAGATAGCCGAAGTCAATGGCTTGTGTTTTATAGACTTGATCAATTCACTCTTAATGGGACAGGAATCATTGAAGGCAATGGGGAACAATGGTGGGATCTTCCTTGCAAACCTCACAGGGGTCCAGATGGGAAAACTACATCAGGACCATGTGGGAGTCCAACAATGATAAGGTTCTTCCTCAGCTCCAACTTGCTGATGAGGGGTGTGAAGATTCAAAACAGCCCCATGTTCCATGTGAAGTTTGATGGCTGCCAAGGAGTGCGGATCGACGAGGTGTCCATTTCTGCGCCGAAACTCAGCCCCAACACTGATGGAATCCACTTAGGAAACACGAAGGGTGTTTCGATTTACAACACCATGATAAGCAATGGTGATGATTGTGTTTCAATTGGACCCGGGTGCTCAGATGTGGACATTAATGGATTAACTTGTGCTCCCACACACGGAATTAGCATTGGAAGCCTTGGAGTGGACAACTCACATGCTTGTGTCTCCAACATAACTGTCAGAAATTCTGTGATAAAGGAATCAGACAATGGGCTGAGGATTAAGACATGGCAAGGAGGTACAGGTTCAGTGACAAACTTGAGATTTGAGAACATCCAAATGGAGAATGTGAGGAACTGCATCAACATAGACCAGTACTACTGCCTGACCAAGGAGTGCAGGAACCAAACATCAGCAGTACATGTAAATGATGTGTCGTACATTAACATAAAGGGGACTTATGATGTGAGAACACCTCCTATACACTTTGCTTGCAGTGACAGTGTTGCGTGCACAAACATAACACTTTCAGATGTAGAGCTTTTGCCATATGAAGGGGAGTTACTGGAGGATTCATTTTGCTGGAATGCTTATGGGACGCAAGAGACAATAACAGTTCCTCCAATTGATTGCTTAAGGGAAGGTGAACCTGAGAGGGTTATAGAGCTCTCCCAATATGAATGCAGTTAA 1428 0.4524 MIFIRGCFILWITVILFIHDLDNVEGRNHYHKKQNKKSPAPKSPAHSPAPPSDTSPPSSTSPSVPSDPYPNDPGDSGCVFDVMSFGAVGDGSADDTAAFREAWKAACAVESGVVLAPENYCFMITSTIFSGPCKPGLVFQVEGTLMAPDGPDSWPKADSRSQWLVFYRLDQFTLNGTGIIEGNGEQWWDLPCKPHRGPDGKTTSGPCGSPTMIRFFLSSNLLMRGVKIQNSPMFHVKFDGCQGVRIDEVSISAPKLSPNTDGIHLGNTKGVSIYNTMISNGDDCVSIGPGCSDVDINGLTCAPTHGISIGSLGVDNSHACVSNITVRNSVIKESDNGLRIKTWQGGTGSVTNLRFENIQMENVRNCINIDQYYCLTKECRNQTSAVHVNDVSYINIKGTYDVRTPPIHFACSDSVACTNITLSDVELLPYEGELLEDSFCWNAYGTQETITVPPIDCLREGEPERVIELSQYECS* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2742 475 PANTHER - 4 465 - -
Lja6g2742 475 Pfam Glycosyl hydrolases family 28 122 427 IPR000743 GO:0004650|GO:0005975
Lja6g2742 475 MobiDBLite consensus disorder prediction 29 70 - -
Lja6g2742 475 MobiDBLite consensus disorder prediction 43 69 - -
Lja6g2742 475 Gene3D - 72 463 IPR012334 -
Lja6g2742 475 SMART pbh1 268 289 IPR006626 -
Lja6g2742 475 SMART pbh1 321 342 IPR006626 -
Lja6g2742 475 SMART pbh1 350 371 IPR006626 -
Lja6g2742 475 SMART pbh1 241 267 IPR006626 -
Lja6g2742 475 PANTHER POLYGALACTURONASE PLANT-LIKE PROTEIN 4 465 - -
Lja6g2742 475 SUPERFAMILY Pectin lyase-like 77 473 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2742 Lja-Chr6 56441543 56444523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2742 1 463 Glycoside Hydrolase AT1G48100 68.103 0.0 658
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2742 - - gmx:100785528 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2742 6 56441543 56444523 Lja6g2742 6 56441543 56444523 ECH
Lja6g2742 6 56441543 56444523 Lja1g0457 1 4053993 4056363 ECH
Lja6g2742 6 56441543 56444523 Lja5g1265 5 12700633 12703702 ECH