Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1265 ATGAGGAATTCTCCTATTTTAACACTATCAATTTTCTCCATATACTTTCTTACGTTATTTCTTTCCACACAAGCAAGATACCATTTCCATACAAAACACCACCAGCACCCACATTCTCAAAAGTCTTCAGGAATTTCACTACCACCTGCTTCACTCCCTTCACCTTCTAGCTATACTGATGATGATGCTCCTAGTCCTAGCCCCTCTGGTGATGAAAACTACCATGATGAATCTAACTTGTTCAATATAAGAACATTTGGGGCCATTGGTGATGGAATAGCTGATGATACAGAATCCTTCAAGATGGCTTGGGACAGTGCCTGCCTAAGTGAATCAGAAGTTAACACTATCCTTGTTCCCCCTGGATTCTCCTTCGTTATTCAATCTACTATATTCACAGGTCCTTGTCAAGGTAGCATAGTATTGAAGGTTGATGGAACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAATAGCAAGCGTCAATGGTTGGTCTTTTATAGAATCAATGGGATGTCACTTGAAGGAAGTGGTTTAATTGATGGGAGAGGACAAAAATGGTGGGACCTTCCCTGTAAACCTCATAAGGGACCTAATGGGACAACATCCCCAGGACCTTGTGACAGCCCAGTTGCCTTAAGGTTTTTCATGAGTTCCAACTTGACTGTAAAAGGACTTAGGATAAAAAATAGCCCCCAATTCCATTTCAGATTTGATGGCTGCCAAAGTGTCCATGTAGAATCAATCTTCTTAACAGCTCCAGCACTAAGCCCCAACACTGATGGAATCCACATAGAGAATACCAATGACGTGAAGATATACAATTCTGTCATTTCTAATGGTGATGACTGTGTGTCCATTGGATCTGGTTGCTATGATGTTGATATAAAGAACATGACATGCGGACCAGGTCATGGAATCAGCATTGGTAGTCTGGGAAATCACAACTCTAGAGCCTGTGTTTCAAACATCACAGTGAGGGACTCAGTCATAAAATTGTCAGATAATGGGGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCAGGAGTGACATTCAGCAACATTCACATGGATAGTGTGAAGAATCCCATTATAATTGACCAGTTCTATTGCCTTAGCAAGGAATGCACAAACAAGACCTCTGCAGTGTTTGTATCAGATATAGTTTACTCAAACATAAAGGGAACTTATGATGTAAGGCACCCTCCTATGCATTTCGCTTGCAGTGACTCTATCCCCTGCACCAACTTGACTCTTTCAGATATTGAGCTTCTTCCTGCTCAAGGAGACATGGTGCTTGATCCTTTCTGTTGGAATGCTTATGGAAATTCAGAGACACTAACTATTCCCCCAGTGTTTTGCTTGCTGGAAGGTTTTCCTCAGTCCATTTCAACCAATGATATAGATCATTGCTAA 1434 0.4149 MRNSPILTLSIFSIYFLTLFLSTQARYHFHTKHHQHPHSQKSSGISLPPASLPSPSSYTDDDAPSPSPSGDENYHDESNLFNIRTFGAIGDGIADDTESFKMAWDSACLSESEVNTILVPPGFSFVIQSTIFTGPCQGSIVLKVDGTLMPPDGPESWPKNNSKRQWLVFYRINGMSLEGSGLIDGRGQKWWDLPCKPHKGPNGTTSPGPCDSPVALRFFMSSNLTVKGLRIKNSPQFHFRFDGCQSVHVESIFLTAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGSGCYDVDIKNMTCGPGHGISIGSLGNHNSRACVSNITVRDSVIKLSDNGVRIKTWQGGSGSVSGVTFSNIHMDSVKNPIIIDQFYCLSKECTNKTSAVFVSDIVYSNIKGTYDVRHPPMHFACSDSIPCTNLTLSDIELLPAQGDMVLDPFCWNAYGNSETLTIPPVFCLLEGFPQSISTNDIDHC* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1265 477 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 467 - -
Lja5g1265 477 PANTHER - 9 467 - -
Lja5g1265 477 MobiDBLite consensus disorder prediction 40 74 - -
Lja5g1265 477 Pfam Glycosyl hydrolases family 28 112 430 IPR000743 GO:0004650|GO:0005975
Lja5g1265 477 Gene3D - 67 461 IPR012334 -
Lja5g1265 477 SMART pbh1 271 292 IPR006626 -
Lja5g1265 477 SMART pbh1 324 345 IPR006626 -
Lja5g1265 477 SMART pbh1 294 314 IPR006626 -
Lja5g1265 477 SMART pbh1 221 270 IPR006626 -
Lja5g1265 477 SMART pbh1 353 374 IPR006626 -
Lja5g1265 477 ProSitePatterns Polygalacturonase active site. 301 314 IPR000743 GO:0004650|GO:0005975
Lja5g1265 477 SUPERFAMILY Pectin lyase-like 79 466 IPR011050 -
Lja5g1265 477 MobiDBLite consensus disorder prediction 31 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1265 Lja-Chr5 12700633 12703702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1265 76 477 Glycoside Hydrolase AT1G02460 73.333 0.0 638
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1265 - - gmx:100792285 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1265 5 12700633 12703702 Lja5g1265 5 12700633 12703702 ECH
Lja1g0457 1 4053993 4056363 Lja5g1265 5 12700633 12703702 ECH
Lja6g2742 6 56441543 56444523 Lja5g1265 5 12700633 12703702 ECH
Lja1g0457 1 4053993 4056363 Lja5g1265 5 12700633 12703702 PCT