Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0457 ATGTTGAGAATGAAGCATTCCCATATTTTACCTCTAGCATTTTGTATATTTTCCCTTACTTTGTTTCTTTCAGCCCAAGCTAGACATCATTCTCATACAAAGCACAACAAGCACTCGCATTCTCATAAGTCAACTAAAACTTCACCACCTCCCCCACCCCATAACTGCTATAATGCAACTGGCATTTTTGATGTAACAACATTTGGGGCAGTTGGAGATGGAATTGCAGATGATACAGTGTCATTCAAGATGGCATGGGACACTGCATGCCAAAGTGAATTACCAGGTAATGTCATCCTTGTTCCCAAAGGTTTCTCCTTCATCATTCAGTCTACTATCTTCACAGGTCCTTGTCAAGGTGGCATAGTATTCAAGGTGGAAGGCACTCTTATGCCACCTGATGGACCTGAATCTTGGCCTAAGAATATCAGCAGGCATCAATGGCTGGTTTTTTACAGAATCAATGGAATGTCACTAGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCATGTAAACCTCACAGGGGACCTCATTGGACAACGCTCCCTGGACCTTGTGATAGCCCAGTTGCCATAAGGTTTTTCATGAGTTCAAACTTGACTGTGCAAGGACTTAGGGTGAAGAACAGCCCCCAGTTCAATTTCAGATTTGATGGCTGCATAAAAGTCCATGTAGAATCAATCTACATAACAGCTCCAAAACTAAGCCCCAATACTGATGGAATTCACATAGAAAATACAAATGATGTGAAAATTTATAACTCTATGATTTCTAATGGTGATGACTGTGTGTCCATTGGATCCGGCTGCTATGATGTTGATATAAAGAACATTACATGCGGACCAGGTCATGGAATTAGCATTGGTAGTCTGGGAATTCACAACTCTCGAGCCTGCGTTTCGAACATTACGGTAAGAGACTCAATGATGAAGGGGACGGATAATGGGGTTAGAATCAAGACATGGCAAGGTGGATCAGGATCAGTATCTGGAGTCAAATTCAGTAACATTCGCATGGTTAATGTGAGAAATCCAATCATAATTGACCAATTCTACTGCATCACTGAGGGTTGCACCAACAAAACCTCCGCAGTGTTTGTATCAAACATCCTTTACACAAACATCAAGGGAACTTATGACGTAAGGAGCTTGCCTATGCGTTTCGCCTGCAGCGACTCTATTCCGTGCACCCACTTAGCACTCTCAGATATTGAACTTCTTCCTGCTGAAGGAGATATAGCGCATGATCCTTTCTGTTGGAATGCTTATGGTGATTTGCAGACACTAACCATTCCACCAGTGTCTTGCTTGATGCAGGGCACTCCTCAGTCCTGGTTAGACCATGACATAAATGGTTGCTGA 1380 0.4268 MLRMKHSHILPLAFCIFSLTLFLSAQARHHSHTKHNKHSHSHKSTKTSPPPPPHNCYNATGIFDVTTFGAVGDGIADDTVSFKMAWDTACQSELPGNVILVPKGFSFIIQSTIFTGPCQGGIVFKVEGTLMPPDGPESWPKNISRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHRGPHWTTLPGPCDSPVAIRFFMSSNLTVQGLRVKNSPQFNFRFDGCIKVHVESIYITAPKLSPNTDGIHIENTNDVKIYNSMISNGDDCVSIGSGCYDVDIKNITCGPGHGISIGSLGIHNSRACVSNITVRDSMMKGTDNGVRIKTWQGGSGSVSGVKFSNIRMVNVRNPIIIDQFYCITEGCTNKTSAVFVSNILYTNIKGTYDVRSLPMRFACSDSIPCTHLALSDIELLPAEGDIAHDPFCWNAYGDLQTLTIPPVSCLMQGTPQSWLDHDINGC* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0457 459 SUPERFAMILY Pectin lyase-like 53 450 IPR011050 -
Lja1g0457 459 SMART pbh1 203 225 IPR006626 -
Lja1g0457 459 SMART pbh1 306 327 IPR006626 -
Lja1g0457 459 SMART pbh1 226 252 IPR006626 -
Lja1g0457 459 SMART pbh1 253 274 IPR006626 -
Lja1g0457 459 SMART pbh1 276 296 IPR006626 -
Lja1g0457 459 SMART pbh1 335 356 IPR006626 -
Lja1g0457 459 MobiDBLite consensus disorder prediction 32 53 - -
Lja1g0457 459 Gene3D - 53 452 IPR012334 -
Lja1g0457 459 Pfam Glycosyl hydrolases family 28 98 412 IPR000743 GO:0004650|GO:0005975
Lja1g0457 459 PANTHER - 9 449 - -
Lja1g0457 459 ProSitePatterns Polygalacturonase active site. 283 296 IPR000743 GO:0004650|GO:0005975
Lja1g0457 459 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0457 Lja-Chr1 4053993 4056363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0457 61 459 Glycoside Hydrolase AT1G02460 69.403 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0457 - - gmx:100778836 757.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0457 1 4053993 4056363 Lja1g0457 1 4053993 4056363 ECH
Lja1g0457 1 4053993 4056363 Lja5g1265 5 12700633 12703702 ECH
Lja6g2742 6 56441543 56444523 Lja1g0457 1 4053993 4056363 ECH
Lja1g0457 1 4053993 4056363 Lja5g1265 5 12700633 12703702 PCT