Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g1116 ATGCCGACGTCGGTAAGCGCAGCGAGGCAATGTTTGACAGATGAAGCGGCGCGTGCACTTGACGACGCGGTTTCAGTTGCCCGCCGTCGCAGCCACGCGCAGACGACGTCGCTCCACGCGGTTTCCGCCCTGCTCTCACTCCCAACCTCCGCTCTCCGCGACGCGTGCGCGCGTGCCGGCAGCTGCTCCTACTCGCCGCGCCTCCAGCTCCGCGCCCTGGAACTCTCCGTCGGCGTCTCCCTCGACCGGCAAACAACCTCCAAATCCGCCAACGACGGCGGCGACGACGGACCTCCGGTGTCGAACTCGCTCATGGCAGCCATCAGGCGCGCGCAGGCCAACCAACGCCGCCACCCGGAGAGCTTCCACCTCCTCCAGATGATGCAGAACCAGAACCAGAGCCAAACGGCGTCGTTGCTGAAAGCTGAGCTCAAACACTTCATCCTCTCGATACTCGATGACCCAATCGTGAGCCGCGTCTTCGCTGAAGCTGGATTTCGAAGCTACGACATCAAGCTCGCTCTGCTTCAACCGCCACCACCACCGGTGTTTTCTTCTTCTTCCGCTTCCTCTTCTTCCAGATTCTTCTCTCGGGCCCCACCGGTTTTCCTATGCAACATCGACCCGGCCCGGTCGGGTTTTCCGTTTGCCTTATCCGGGTCCGACGATAATTCACGGAGGATTGCGGAGGTTCTTGCTCGGAAGAGCAAGAGGAACCCGCTCTTGATGGGTGTTTATGCGAAGAGCGCTCTTCGGAGCTTCATGGAGTCTGTTCAAATGGGTAAAGCTGGGTTTCTGCCTCGTGAGCTTGCTGGGTTGGGTGTGATTTCCATTGAGAAGGAGATTTCTGAGTTTGTTGGTGGTGGTGGGAGCGAGGAGAAGATGGGGTTGAAATTTGAGGAAGTGGGTCGTTCTGCTGAGCAATGTTCAGGGCCTGGTGTTGTGGTGTGCTTAGGGGAGATTGAAGTTTTTGTTAATGGTGGCGGCGGCGGCGGTGGTGGTGTTGGATTCATTGTTTCGCGGTTGAAGAGGTTGTTGGAGGTTCATGGTGGGAAGGTGTGGTTGGTCGGAGTGGCGGGAACTTCAGATGGCTATTCTAAGCTTCTGGGGTTGTTCCCTACACTTGATAAGGATTGGGATCTTCATGTCCTGACTGTGACTTCTGCTACCCCTTCAATGGAAGGACTCTACCCTAAATCCAGCTTGATGGGGTCGTTTGTTCCATTAGGTGGGTTCTTTTCTACACCTTCTGATTTCAGAAATCCCTGTGCAAATGCTTCTTTAGCATGTAGTGACACATGCAATGAAAAGTGGGAACAAGAACATGCTGATACTGTGAAGGTAGGCCCTGCCACTTCAACTTGTGGTGGTCACTCAACAAGCTTGCCTTGGTTACAAAAAGTGAATGTGGAGACAGATAGAGGATTGGATTTAGCAAAGACTAATGAAGAGAACACAAGTACAAATCCTCAAATCTCTGGATTGCAAAGGAAACAGAGTGATATTTGTCATGGTCTTCGTCAGAACCGATCATTACCTGCAATTGATACGTCCCAAACAAGGTTCCAAGCTCCATTCCATGAGGGATTTCGGCATGGTTCAGGTGTTAACCAAAGTTGTTATACAAGTCCATCATCCCTTAATGAAGTACAATGTTCTGGCCAAACTTTGTATGTGTCTAAGGAGTTACAAACTGCATTCCCATCTAAACAGATGTTACCAGTTTCAGCACCTTTAGATACTGTTAGTGTCAATGATGAAGTTAACCATGCAACAAAAAGTGACATGCAAAGTACTTGGGTTTCATCCCTTACTCCTGTTACCACAGAATTGGTATTAGGAACTAAATACTCGTCAGCTGCTCATGAACCAGATACCCCGAAAGGGAGTGATCATAGGATGCATCCTCAGCACTTATCCGACTCGCTCTCAACTGATTTTGATGCTATGAATGAGAGTGCTTCACACCAAATTGCTAGATCTTCTTCTTGCTCAGGTCCACATTTGGAAGGGAAATTTGAAACAGTTGATTTCAAGTCACTTTACCAACACATCATTGAAAAAGTTGGCCGGCAAGATAAGGCTATATATGATATTACAAGAACTATATCACTTTGTAGATCTGGTGTTGGAAAGCGTAGCGGATCACATGTTAGAAGAGATGTATGGCTTGCTTTCCTTGGACCAGATAGGCTTGGAAAGAGGAAAATTGCTTCAGCACTTGCAGAGATTTTATTTCAAAACAGACAAAGTGTGATCACTGTGGATTTGAGCTTCCAGGAAAGTCCTTACCAGTCAAACTCGACTTTCGAATTCCAAAATTCATGTTGTCATGATGTGCTTAGGAGGAAGATAGTTGTGGACTACATTGCTGGGGAGTTGAGTAAAAAGCCTCATTCAGTTGTCTTTCTTGAAAATATAGATAAGGCTGATTTTTTGGTGCAGAGTAGTTTATTCCAAGCAATAAGAACAGGTAAATTTCCATACTCGCTCGGTAGGGAAATAGGCATCAACAATGCAATCTTTATTGTGACGTCGACCGTGTTTAAAGGTAATGGCTCTTTTCATTTGGCGGAGGAGCCTAAAATGTTTCCTGAGGAAAGAATCCTTGAAGCTAAAAGATTTCAAATCCAATTATCACTTGGACATGCTTCTGAGGATGCCAGAAGAAGCGGTAGCAAAAACGTGAAGGTTGCACAGAGAAAAGGGAGTTTCAAAGCAACATTTCTGAATAAAAGAAAGCGAAGTGAAGGAAATGATTCCAAATGCAAGACACAAAAACAGGTAAGGGAGGCATCAAGGTCTTATCTGGATCTGAATATGCCTCTAGAGGAGGTTGACGAGGATAATAATGACAGTGATTGTGAAAATCAATCCATGGTTGAAAATTCTGAAGCCTGGTTAAGTGATTTCTGTGATCAAATTGATGGAGAAGTGGTTTTTAAGCCATTCAATTTTGATTCCCTTGCCGAGCAAGTAATAGAATGTGTTGAGACACGATTTCAAAGGACATTTGGATCAGAGTTTCTGCTGGAAATTGATTATGAGGTCATGGCACAGATACTTGCAGCTGCATGGTTATCGGACAAGAAAAAATCTGTGGAGGATTGGATTGAGCATGTTGTTGGAAGAAGCTTTGCCGAGGCGCGGCAGAAGTACCATCACCACCACCCTGCAGCTGAATATGTCATGAAACTGGTTAACTGTGAAAGCATTTTTGTGGAAGAGCAAGCTCTAGGAGTGTGCCTTCCAGCTAGAATTAACTTAAACTGA 3273 0.4684 MPTSVSAARQCLTDEAARALDDAVSVARRRSHAQTTSLHAVSALLSLPTSALRDACARAGSCSYSPRLQLRALELSVGVSLDRQTTSKSANDGGDDGPPVSNSLMAAIRRAQANQRRHPESFHLLQMMQNQNQSQTASLLKAELKHFILSILDDPIVSRVFAEAGFRSYDIKLALLQPPPPPVFSSSSASSSSRFFSRAPPVFLCNIDPARSGFPFALSGSDDNSRRIAEVLARKSKRNPLLMGVYAKSALRSFMESVQMGKAGFLPRELAGLGVISIEKEISEFVGGGGSEEKMGLKFEEVGRSAEQCSGPGVVVCLGEIEVFVNGGGGGGGGVGFIVSRLKRLLEVHGGKVWLVGVAGTSDGYSKLLGLFPTLDKDWDLHVLTVTSATPSMEGLYPKSSLMGSFVPLGGFFSTPSDFRNPCANASLACSDTCNEKWEQEHADTVKVGPATSTCGGHSTSLPWLQKVNVETDRGLDLAKTNEENTSTNPQISGLQRKQSDICHGLRQNRSLPAIDTSQTRFQAPFHEGFRHGSGVNQSCYTSPSSLNEVQCSGQTLYVSKELQTAFPSKQMLPVSAPLDTVSVNDEVNHATKSDMQSTWVSSLTPVTTELVLGTKYSSAAHEPDTPKGSDHRMHPQHLSDSLSTDFDAMNESASHQIARSSSCSGPHLEGKFETVDFKSLYQHIIEKVGRQDKAIYDITRTISLCRSGVGKRSGSHVRRDVWLAFLGPDRLGKRKIASALAEILFQNRQSVITVDLSFQESPYQSNSTFEFQNSCCHDVLRRKIVVDYIAGELSKKPHSVVFLENIDKADFLVQSSLFQAIRTGKFPYSLGREIGINNAIFIVTSTVFKGNGSFHLAEEPKMFPEERILEAKRFQIQLSLGHASEDARRSGSKNVKVAQRKGSFKATFLNKRKRSEGNDSKCKTQKQVREASRSYLDLNMPLEEVDEDNNDSDCENQSMVENSEAWLSDFCDQIDGEVVFKPFNFDSLAEQVIECVETRFQRTFGSEFLLEIDYEVMAQILAAAWLSDKKKSVEDWIEHVVGRSFAEARQKYHHHHPAAEYVMKLVNCESIFVEEQALGVCLPARINLN* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g1116 1090 Gene3D - 10 177 IPR036628 -
Lja6g1116 1090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 673 848 IPR027417 -
Lja6g1116 1090 Pfam AAA domain (Cdc48 subfamily) 724 848 IPR003959 GO:0005524|GO:0016887
Lja6g1116 1090 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1090 - -
Lja6g1116 1090 Gene3D - 655 915 IPR027417 -
Lja6g1116 1090 MobiDBLite consensus disorder prediction 619 639 - -
Lja6g1116 1090 ProSiteProfiles Clp repeat (R) domain profile. 8 181 IPR004176 -
Lja6g1116 1090 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 1090 - -
Lja6g1116 1090 Gene3D - 210 380 IPR027417 -
Lja6g1116 1090 MobiDBLite consensus disorder prediction 625 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g1116 Lja-Chr6 30713902 30720227 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g1116 - - gmx:100776148 1452.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g1116 6 30713902 30720227 Lja6g1116 6 30713902 30720227 ECH
Lja6g1116 6 30713902 30720227 Lja6g0396 6 9841124 9846945 ECH
Lja5g2431 5 47039850 47044471 Lja6g1116 6 30713902 30720227 ECH
Lja6g1116 6 30713902 30720227 Lja6g1116 6 30713902 30720227 PCT