Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0396 ATGCCAACGCCGGTAGGAGTAGCGAGGCAATGCTTAACAACGGAGGCGGGTCGAGCACTCGACGAGGCGGTGGCGGTAGCACGGCGGCGCGGCCACGCGCAGACAACGTCGCTCCACGCGGTGTCGGCGCTGCTATCCCTACCATCCTCGACGGTGCTCCGCGACGCGTGCTGCCGCGCGCGAAACTCAGCGTACTCTCCGCGTCTTCAGTTCAAGGCTCTCGACCTGTGCCTGTCGGTGTCGCTCGACCGCTCGCCGTCGTCGCACAACCACCACGTTTCCTCCGATCATGAACCGCCGGTGTCCAACTCGCTCATGGCCGCCATCAAACGCTCGCAGGCTAACCAGCGCCGCCACCCGGATAGCTTCTTCTACCACAGCAACCACCAGGTGCAGCAGCAGCAGCAGCAACCGTTTTCCGTTTCTTCAGTCAAGGTCGAGCTTCAGCACTTGATTCTGTCGATCCTTGATGACCCGGTTGTCAGCCGGGTCTTCGCGGAAGCGGGTTTCCGGAGCTCCGAGATCAAGCTCGCCATTCTCCGCCCTCTGCCGCATCTCATGAGGCCGCGCGGGCCGCCGGTTTTCCTCTGCGAGCGGCGGGGGTTCGGGTTTCCGTTTTTCTCAGGCTTCGGCGACGCCGGTGAGAATTTCCGGCGAATCGGTGAGGTGCTTGTACGGAGCAGGGGGAGGAATCCTCTGCTTCTCGGCGCGTGCGGCGGCGATGCTCTCCGGAGCTTTACGGAGGCGGTGGAGAGGAGAACGGACGGGGTGTTGCCGCTGGAGCTCACGGGGATGCGCGTGGTTTGCATTGGGAAGGAGGTGGAGAGTGGAGACGGCGAGGCCGTCGGTGCGAAGATGAAGGAGATCGCTGCTATGGCGGAGGAGTGTGTGGGGCCCGGTGTGGCGGTGAATTTTGGGGACTTAAAGGGTTTTGTGGGTGGTGATTCTGATGGGTGTGGTGGTTCTGGGGAAGATGCTGTGAGGTTTGTTGTTGGGGAATTGGCTAAGTTGTTGAAGGTTCACTGTGACAGGTTTTGGTTGCTGGGTGCTGCTGCTAGCTATGAAAGCTACTTGAAATTTCTGGGTAGGTTCCCTTCAATAGAGAAAGACTGGGACTTGCAGTTTTTGCCTATCACCTCTGTTAAGCCTTCTTCCATGGCTGCTGAATCATATCAAAGGCCCAGGTCAAGCTTAATGGATTCATTTGTACCATTTGGTGGCTTTTTTCCATCAAAGTCTGATTTGAAAAGTCCATTAAATGGCTCATCTTGTTGTCTTCCTCATTGTCATCAATATGGTGAGAAGTGTGAACATGAAGTCTTTTCTGCTTCCGTGGCTGATCCCTACCAATCTAGCTTACCTCCATGGTTGCAGATTACAGAATTTGGCACAGCAAAGGGATTGAATGTCAAGACCAAAGATGATGGTGTTTTGCTGGATAGTAGCGAATCTGGACCACCACAGAAGAACTTGGACAAGACATGCCGGCAGCTGCACCAGCGAATTCCGGTGTCAAATACCTGTCCAATCGTCATCGGGTTTCATTGTACTGACAACAAAAAGGAAGATGCTGAGAACTGCCGCAGCAAAATTACAGACAAATCACCTAGTGAACATGTCAATCTCAACTCCCATGTACCTGTTGGTGTGAAAATGATGTGTGCATCGCAATCCAGCAGTTCTTTTCCTGTGATTTTCATGGCAAAACAGGCGAAATATACTTCAAAACTTCCAGAGATGCTCCAGAAAGTGGAAGATCTTGAGTCCGGTGACCTAAGATCATGCAACATGTCCAGTTCAAGTGTGTCTGATGGCAGTCAACTATCTCCCACATCTGTGACTTCAGTAACAACAGATCTAGGCTTAGGGCCATGCTCTTCTCCCACCAGCAATAAATCGAAGAAACTAACTTTTCAATATACAATGGAGCCTCCAAAAGAAATCCCAAATCACATATCTTCAGATTTCAATTTGACTGATGGGAGTATTTGGAAGCATCAATCGCAGTCTACATCCTGCTTAAGTTTCGACCATTATCGAGAAGTTGATGCAAAAAATCCCAAAACTCTTTTTGAAGCTCTTTCCAAGGAGGTAAGCTGGCAAAACGAAGCCTTGCGAGCTATCATCAAAACAATAGTTTGCAGCCCAACAGAAAGGGTTAAACATCATGGATCAAATCAGCGCCGTGATATATGGATGAGTTTTGTCGGACCTGATAGGCATGGTAAAAAGAAAATTGCTGTTTCTCTTGCTAAGATATTGTATGGAAGCCGCGAGAGCTTCATTTTTGTGGATCTGGGCTCTGAAGAAATGAAAGGATGCAATGTCAAATTCATAGGAAAGACTACCATTGATTTTATTGTGAGGGAGTATTGCCAGAAACCTTTGTCTGTGGTTTTCCTGGAAAATGTTGACAAGGCGGATATGGTTGTTCAAAGTAGTTTGTCTCAAGCCATCAGGACAGGAAAAATCACAGATTCTCATGGACGAGAAGTGAGTGTAAACAATGCAATTTTTGTGTTTTCTTTCTCAGGTCACCAAGGTTGTTCCTTTCCAACAAGGGAATCCTCCAACTATTCTGAGGAAAGAATACTCAGGGCAAAAGGGGGAGGTATCAAGATTAAAGTTGAAAATGCGATTGGGGACATGAGAAGCCAAAGCATCAGTGCAGCTAACTGTTCAATAGATGCCATTCCTGATCTAAATTTCATAAACAAACGAAAGTTGATTGCCGACAATGAATTTTGCGATCCAGAGACGCCTAAAAGGGCACATACAACATCAAATTGGCTTCTAGATTTGAATCTTCCAGCTGAAGAGGATGAACATAAACAATCAGATGATGGAAACTCTGAACTTGGCTCCACTGAGAACCAACACCTTTGGTTGCAAGGTTTGTACAATCAGGTTGATGAAACAATTTCCTTTGAACCTTATGATTTTGACGCACTTGCGGATAGAGTGTTTAAAGTGATCAAAATTAACTTCAACAAGATTCTTGGATCCGAGTTTAACTTAGAGATCCAGGGAGAAGTCATGGAGCAATTGCTTGCAGCTGCATATCTCTCAGACAGGGATATGGAGGTGGAGAATTGGGTGGAGCAAGTTCTCTGTGGAGGATTCACAGAAGCACAGAGAAGATATAACCTCAATGCTAGTTCTATTGTGAAACTTGCTTCATGTACAGCTCCAAGTGTGCACCTTCCTCCAAGGATAATTGTAGAATGA 3228 0.4823 MPTPVGVARQCLTTEAGRALDEAVAVARRRGHAQTTSLHAVSALLSLPSSTVLRDACCRARNSAYSPRLQFKALDLCLSVSLDRSPSSHNHHVSSDHEPPVSNSLMAAIKRSQANQRRHPDSFFYHSNHQVQQQQQQPFSVSSVKVELQHLILSILDDPVVSRVFAEAGFRSSEIKLAILRPLPHLMRPRGPPVFLCERRGFGFPFFSGFGDAGENFRRIGEVLVRSRGRNPLLLGACGGDALRSFTEAVERRTDGVLPLELTGMRVVCIGKEVESGDGEAVGAKMKEIAAMAEECVGPGVAVNFGDLKGFVGGDSDGCGGSGEDAVRFVVGELAKLLKVHCDRFWLLGAAASYESYLKFLGRFPSIEKDWDLQFLPITSVKPSSMAAESYQRPRSSLMDSFVPFGGFFPSKSDLKSPLNGSSCCLPHCHQYGEKCEHEVFSASVADPYQSSLPPWLQITEFGTAKGLNVKTKDDGVLLDSSESGPPQKNLDKTCRQLHQRIPVSNTCPIVIGFHCTDNKKEDAENCRSKITDKSPSEHVNLNSHVPVGVKMMCASQSSSSFPVIFMAKQAKYTSKLPEMLQKVEDLESGDLRSCNMSSSSVSDGSQLSPTSVTSVTTDLGLGPCSSPTSNKSKKLTFQYTMEPPKEIPNHISSDFNLTDGSIWKHQSQSTSCLSFDHYREVDAKNPKTLFEALSKEVSWQNEALRAIIKTIVCSPTERVKHHGSNQRRDIWMSFVGPDRHGKKKIAVSLAKILYGSRESFIFVDLGSEEMKGCNVKFIGKTTIDFIVREYCQKPLSVVFLENVDKADMVVQSSLSQAIRTGKITDSHGREVSVNNAIFVFSFSGHQGCSFPTRESSNYSEERILRAKGGGIKIKVENAIGDMRSQSISAANCSIDAIPDLNFINKRKLIADNEFCDPETPKRAHTTSNWLLDLNLPAEEDEHKQSDDGNSELGSTENQHLWLQGLYNQVDETISFEPYDFDALADRVFKVIKINFNKILGSEFNLEIQGEVMEQLLAAAYLSDRDMEVENWVEQVLCGGFTEAQRRYNLNASSIVKLASCTAPSVHLPPRIIVE* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0396 1075 MobiDBLite consensus disorder prediction 595 632 - -
Lja6g0396 1075 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1073 - -
Lja6g0396 1075 Pfam AAA domain (Cdc48 subfamily) 733 842 IPR003959 GO:0005524|GO:0016887
Lja6g0396 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 682 1020 IPR027417 -
Lja6g0396 1075 Gene3D - 658 873 IPR027417 -
Lja6g0396 1075 ProSiteProfiles Clp repeat (R) domain profile. 8 185 IPR004176 -
Lja6g0396 1075 PANTHER PROTEIN SMAX1-LIKE 8 1 1073 - -
Lja6g0396 1075 Gene3D - 10 181 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0396 Lja-Chr6 9841124 9846945 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0396 - - gmx:100800606 1503.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0396 6 9841124 9846945 Lja6g0396 6 9841124 9846945 ECH
Lja5g2431 5 47039850 47044471 Lja6g0396 6 9841124 9846945 ECH
Lja6g1116 6 30713902 30720227 Lja6g0396 6 9841124 9846945 ECH
Lja6g0396 6 9841124 9846945 Lja6g0396 6 9841124 9846945 PCT