Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2431 ATGAGAACTGGAAACTGTGCTGTGCAACAAGGCCTAACTGCCGAGGCAGCAAGCTTAGTGAAACAAGCAGTGACCCTCGCGAAACGCCGTGGCCACGCTCAGGTGACTCCACTCCACGTGGCAAACACTATGCTCACTGTCACCAACGGTTTATTCCGTACAGCATGTCTCCAATCCCACTCTCACCCTCTTCAGTGCAAGGCCTTGGAGCTTTGCTTCAACGTCGCCCTCAATCGGCTGCCGGCGTCCACAGCTTCAAGCCCCATGTTGGGTGGTGGTGCTCACAACCACCACTCTCAGTACCCTTCCATCTCCAACGCCTTAGTCGCCGCCTTCAAGCGCGCTCAGGCGCACCAGCGCCGTGGATCGGTCGAGAATCAGCAGCAGCCGCTATTAGCAGTGAAGATTGAGCTTGAGCAGCTCATTATTTCAATCTTGGATGATCCTAGTGTTAGCAGAGTCATGAGAGAAGCTGGGTTTTCTAGCACTCAAGTGAAAAGCAATGTTGAACAAGCTGTTTCCTTGGAAATATGCTCTCAGAATAACAACCAAAACAACAACACTTCAAAGGAGAACAACAATAATCTAATTCTCTCTTCACCTTCTTCTCATGAGACTGTGGGTATGGTTAGGGCTGAGGATATAGAAAGCGTGGTGGAGAATTTGGCGAGTCAAAGAAAAAGATGTACTGTGATTGTGGGAGAGTGTGTGGCTAGTCTTGAAGGTGTGGTTAGAGGAGTGATGGAAAAATTTGATAAAGGGAATGTTGGGGAGTCACTTAGAGGTGTCAAGTTTATCACTCTTTCTCTTTCTTCTCTTGTAAAATTTTCAAGGGAAGAGGTTGAACAAAAGGTTGAAGAGCTTAGGGGTCTTGTGAAAATGGCCTCTCATGGGAAAGGGTACGTTTTGTATGTTGGGGATCTTAAATGGGTGTTTGATTATAGGAAAGGGAGAGGGTGTTACTGCCCTGTGGAGCACATGGTAATGAAGATTGGAAAGGTGGTGAGTGGGGTTGGAGAGAGTGCAAGGTTTTGGGTGATGGGTGTTGCCACTTTCCAAGGTTACATGAGATGTAAAAATGGCCAGCCTTCATTGGAGACTCTTTGGGGTCTTCATCCTATTACTATCCCAGCTGGAAGTTTGAGTTTGAGCCTCATCACTCACAGTGGTCTACAAAATGAGCCCACCAAGGAGAAAGCTGACAGCAACAGAAGTAGCTGGCTATTGCTTGAAAATGATGATCAGAAGCAACCGGCTTGCTTTGCGGAACCCTCAGGGAAAATTGAGACCGAGGTTCGAAGCTTGCTGAGTAGTGATGCTTGTAACAGTGATTCCTCAACTTCAAGCCTTCCTGCATGGCTTCAACAGTATAAGAATGAGAATAAAGCAACTACCTACAATCATCAGGACTGTGTCCCAGTGGGAGAGCTTTGCAAAAAGTGGAGCTCTATGTGTGGCTCAACCCAAAAACAACCCTATCTTTCTGAAAAAGCTCTCACATACACACCATCCTCCGTGTCACCTTCTTCATGCACTTCAGGGTTCTCATACGAACATCACCAACATACTAACAAAAACCCACAAAGCAACAACCACAATTTCTGGATCTCTGAAAGTAGTAGCAAACTCAATGAATCAACTTTGCGAGTTTACAGTTCCAACCCTAATTCTACTTCTTCTAGTGATGTAATGGAAGTGGAGTACGAGAAAAGGTTCAAAGAGTTCAACTCAGAGAAAATGAAAAGCCTGTGCAATGCCTTGGAGAAAAAGGTGCCACGGCAGAAAGATATAATTCCAGAAATTGCAAGCACCGTTTTGCAATGCCGGTCCGGGATGATAAGAAGAAAAGGGAAAGTGATAAACAACAATGAGGTGAAAGAAGAAACTTGGTTGTTTTTCCAAGGTGTGGATGTTGCAGCAAAAGAGGAAATAGCAAGGGAACTAGCCAGGCTTATTTTCGGTTCCCCGAACGACTTTGTTTCAATATCTCTGAGCAGTTTCGCAGATTCAACGGAGGATTGTTGCAGAAACAAAAGATCAAGAGATGAACAAAGTTGCAGTTACATTGAGCGGTTCGCGGATGCAATCTCTTGCAACCCTCATAGGGTGTTCTTAGTTGAGGACATTGAGCAAGTAGATTATTGTTCTCAACTTGGTTTCAAAAGGGCTATTGAAAGAGGAAGAGTTGTAGACTCGAATGGTGAAGAGATTGCGCTTTGTGACGCGATCATCATTCTCAGCTGTGAGAGTTTCAGTTCAAGGTCAAGAGCTTGTTCTCCTAACAAACAAAAAGCGTGTGAAGGTAATTCTCAAGAAGAGAAGGGTGACAATACTTTGGAGGAAATCACTAGCCCTTGTATTTCTTTGGATTTGAATATTTCCATTGATGATGGTGATGATGGTGGTTGTGATGATGATGAGGACCGGTCGGTGGATGAAATTGGGCTTCTTGAATCTGTGGATAGAATGTTTATCTTCAAATTTCAGAACTTATGA 2496 0.4475 MRTGNCAVQQGLTAEAASLVKQAVTLAKRRGHAQVTPLHVANTMLTVTNGLFRTACLQSHSHPLQCKALELCFNVALNRLPASTASSPMLGGGAHNHHSQYPSISNALVAAFKRAQAHQRRGSVENQQQPLLAVKIELEQLIISILDDPSVSRVMREAGFSSTQVKSNVEQAVSLEICSQNNNQNNNTSKENNNNLILSSPSSHETVGMVRAEDIESVVENLASQRKRCTVIVGECVASLEGVVRGVMEKFDKGNVGESLRGVKFITLSLSSLVKFSREEVEQKVEELRGLVKMASHGKGYVLYVGDLKWVFDYRKGRGCYCPVEHMVMKIGKVVSGVGESARFWVMGVATFQGYMRCKNGQPSLETLWGLHPITIPAGSLSLSLITHSGLQNEPTKEKADSNRSSWLLLENDDQKQPACFAEPSGKIETEVRSLLSSDACNSDSSTSSLPAWLQQYKNENKATTYNHQDCVPVGELCKKWSSMCGSTQKQPYLSEKALTYTPSSVSPSSCTSGFSYEHHQHTNKNPQSNNHNFWISESSSKLNESTLRVYSSNPNSTSSSDVMEVEYEKRFKEFNSEKMKSLCNALEKKVPRQKDIIPEIASTVLQCRSGMIRRKGKVINNNEVKEETWLFFQGVDVAAKEEIARELARLIFGSPNDFVSISLSSFADSTEDCCRNKRSRDEQSCSYIERFADAISCNPHRVFLVEDIEQVDYCSQLGFKRAIERGRVVDSNGEEIALCDAIIILSCESFSSRSRACSPNKQKACEGNSQEEKGDNTLEEITSPCISLDLNISIDDGDDGGCDDDEDRSVDEIGLLESVDRMFIFKFQNL* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2431 831 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 830 - -
Lja5g2431 831 MobiDBLite consensus disorder prediction 181 202 - -
Lja5g2431 831 PANTHER PROTEIN SMAX1-LIKE 3 1 830 - -
Lja5g2431 831 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 571 750 IPR027417 -
Lja5g2431 831 Gene3D - 558 788 IPR027417 -
Lja5g2431 831 Gene3D - 202 372 IPR027417 -
Lja5g2431 831 SUPERFAMILY Double Clp-N motif 12 169 IPR036628 -
Lja5g2431 831 Gene3D - 9 174 IPR036628 -
Lja5g2431 831 Pfam Clp amino terminal domain, pathogenicity island component 136 173 IPR004176 -
Lja5g2431 831 Pfam Clp amino terminal domain, pathogenicity island component 23 52 IPR004176 -
Lja5g2431 831 ProSiteProfiles Clp repeat (R) domain profile. 8 176 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2431 Lja-Chr5 47039850 47044471 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2431 - - gmx:100807485 1120.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2431 5 47039850 47044471 Lja6g0396 6 9841124 9846945 ECH
Lja5g2431 5 47039850 47044471 Lja5g2431 5 47039850 47044471 ECH
Lja5g2431 5 47039850 47044471 Lja6g1116 6 30713902 30720227 ECH