Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0362 ATGCTCCTCAGAGCAGCTTCCTCTTTCTCTCTTCTCAACTCCAATGGCGGCGACCATCTTCTCCCCCCTCTGTTTTCCTCTTCCGTTTCACCCAAAACCTTTCTCCCCTGCGCCACCAAGGGCTCCAACAACCGCCCCCTAACCGGCGTCGTTTTTGAACCCTTTGAAGAGGTCAAGAAGGAGCTCGACCTTGTTCCCACTGTTCCTCAAGCTTCCCTTGCTCGCCAGAAGTTCGTAGATGAGTGTGAGGCTGCGATTAACGAGCAGATCAATGTGGAGTACACTGTTTCGTATGTTTACCATGCAATGTTTGCCTACTTCGACAGGGACAATGTTGCGCTTAAGGGTCTTGCCAAGTTTTTCAAGGAGTCAAGTATGGAGGAAAGGGAGCATGCTGAAAAATTGATGGAGTATCAGAACAAACGGGGTGGGAGAGTGAAGTTGCAGTCTATAGTGATGCCTCCTTCTGAGTTTGAACATGAGGAAAAGGGAGATGCGCTATATGCAATGGAACTTGCTCTGTCATTGGAGAAGCTAACAAATGAAAAGCTCCTTAACTTGCACAGTGTTGCCTCAAAGAACAACGATGCGCAGTTGACAGATTTTATTGAAAGCGAGTATTTGGGTGAACAGGTGGAATCTATTAAACAAATCTCGGAGTACGTTGCTCAGCTTAGAAGAGTTGGCAAAGGACATGGTACCTGGCACTTCAATCAGATGCTGCTCCAGGACGGAGTTGCTGCTTGA 747 0.4779 MLLRAASSFSLLNSNGGDHLLPPLFSSSVSPKTFLPCATKGSNNRPLTGVVFEPFEEVKKELDLVPTVPQASLARQKFVDECEAAINEQINVEYTVSYVYHAMFAYFDRDNVALKGLAKFFKESSMEEREHAEKLMEYQNKRGGRVKLQSIVMPPSEFEHEEKGDALYAMELALSLEKLTNEKLLNLHSVASKNNDAQLTDFIESEYLGEQVESIKQISEYVAQLRRVGKGHGTWHFNQMLLQDGVAA* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0362 248 Pfam Ferritin-like domain 84 228 IPR008331 GO:0008199
Lja6g0362 248 CDD Euk_Ferritin 80 239 - -
Lja6g0362 248 PANTHER FERRITIN-2, CHLOROPLASTIC 1 244 - -
Lja6g0362 248 ProSitePatterns Ferritin iron-binding regions signature 2. 196 216 IPR014034 -
Lja6g0362 248 PANTHER FERRITIN 1 244 IPR001519 GO:0006826|GO:0006879|GO:0008199
Lja6g0362 248 ProSiteProfiles Ferritin-like diiron domain profile. 76 229 IPR009040 -
Lja6g0362 248 ProSitePatterns Ferritin iron-binding regions signature 1. 127 145 IPR014034 -
Lja6g0362 248 Gene3D - 45 245 IPR012347 -
Lja6g0362 248 SUPERFAMILY Ferritin-like 70 243 IPR009078 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0362 Lja-Chr6 9188417 9191002 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g0362 K00522 - gmx:100810000 396.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0362 6 9188417 9191002 Lja1g3345 1 41615741 41617320 ECH
Lja6g0362 6 9188417 9191002 Lja6g0362 6 9188417 9191002 ECH
Lja3g3364 3 66381005 66383895 Lja6g0362 6 9188417 9191002 ECH
Lja6g0362 6 9188417 9191002 Lja6g0362 6 9188417 9191002 PCT