Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3345 ATGGCTCTTGCTTCTTCCGTGTTTTCTCCTCTCTCAACCTCAACCATTATTGGCGATGGTCTGAGAAAACCAGCTTCTTCTGCTTCTTCTCCTTCTTGTTCTCTGAGCTTTGATAAGAAATGGGGTAGCAGAAACGTTGCCGTTTCAGCATTGACTGCGCCTCTCACTGGTGTGATATTTGAACCGTTTGAGGAGGTGAAGAAGGAAGCGCTTGCTGTTCCAGTAGTGCCTCAGGTTTCATTGGCTCGTCAGAACTACGCTGATGAATGTGAATCTGTAATTAATGAACAGATCAATGTGGAATACAACGTTTCCTATGTGTACCACTCCTTGTTTGCTTACTTTGACAGAGATAATGTGGCTCTCAGGGGATTTGCCAAATTCTTCAAGGAATCTAGTGAAGAAGAAAGAGAGCATGCTGAAAAGCTTATGAAATATCAGAACATTCGTGGTGGAAGAGTTGTACTTCACCCCATCAAGAATGTCCCCTCCGAATTTGAGCATGTGGAGAAGGGGGATGCATTGCATGGTGAATATTGCAGAAAAACCTAA 552 0.4366 MALASSVFSPLSTSTIIGDGLRKPASSASSPSCSLSFDKKWGSRNVAVSALTAPLTGVIFEPFEEVKKEALAVPVVPQVSLARQNYADECESVINEQINVEYNVSYVYHSLFAYFDRDNVALRGFAKFFKESSEEEREHAEKLMKYQNIRGGRVVLHPIKNVPSEFEHVEKGDALHGEYCRKT* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3345 183 Pfam Ferritin-like domain 94 169 IPR008331 GO:0008199
Lja1g3345 183 ProSitePatterns Ferritin iron-binding regions signature 1. 135 153 IPR014034 -
Lja1g3345 183 SUPERFAMILY Ferritin-like 78 172 IPR009078 -
Lja1g3345 183 PANTHER FERRITIN 1 176 IPR001519 GO:0006826|GO:0006879|GO:0008199
Lja1g3345 183 CDD Euk_Ferritin 88 176 - -
Lja1g3345 183 Gene3D - 53 178 IPR012347 -
Lja1g3345 183 PANTHER FERRITIN-1, CHLOROPLASTIC 1 176 - -
Lja1g3345 183 ProSiteProfiles Ferritin-like diiron domain profile. 84 183 IPR009040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3345 Lja-Chr1 41615741 41617320 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3345 K00522 - gmx:547824 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g0362 6 9188417 9191002 Lja1g3345 1 41615741 41617320 ECH
Lja1g3345 1 41615741 41617320 Lja1g3345 1 41615741 41617320 ECH
Lja1g3345 1 41615741 41617320 Lja3g3364 3 66381005 66383895 PCT