Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lja6g0050 | ATGAATTCTCTTCAAGAATTTGAATCATCACCAAACCAGGACAACAAAGGCATCAGCACAACCATCACCAACATAGCAGGGAGCAGCTCCAATTTGATGATGACTATGTCTTCATCAGCCTCATCATCATCATCAACAACAGCAGCAACATCATCACCACCATCAACAACTCCGAGCCGCTACGAGAACCAGAAGCGAAGAGACTGGAACACGTTTGGCCAGTACCTTAGAAACCATAGACCGCCACTGTCGCTCTCACGCTGCAGCGGCGCTCATGTGCTTGAGTTCCTAAGGTACCTTGACCAATTCGGGAAGACAAAGGTTCACACACATGTTTGTCCATTCTTCGGACACCCGAACCCCCCTGCACCGTGTCCATGCCCCCTGCGCCAAGCGTGGGGGAGCTTGGACGCTCTGATAGGGAGGCTCAGGGCTGCGTTTGAAGAGAATGGAGGGAAGCCGGAGGCGAACCCTTTCGGTGCTCGAGCGGTGAGGCTCTACCTTCGTGAAGTGCGTGACTCACAAGCTAAAGCCAGGGGAATCAGCTACGAGAAAAAGAAGCGCAAGCGTCCACCTCACCCACCACCACCTCCTGCGGCGTTGCCACCATCAAATGGAGCAAGAGCAACTCACTAG | 636 | 0.533 | MNSLQEFESSPNQDNKGISTTITNIAGSSSNLMMTMSSSASSSSSTTAATSSPPSTTPSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHVCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPEANPFGARAVRLYLREVRDSQAKARGISYEKKKRKRPPHPPPPPAALPPSNGARATH* | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lja6g0050 | 211 | MobiDBLite | consensus disorder prediction | 34 | 60 | - | - | |
| Lja6g0050 | 211 | PANTHER | PROTEIN G1-LIKE5 | 31 | 206 | - | - | |
| Lja6g0050 | 211 | MobiDBLite | consensus disorder prediction | 34 | 66 | - | - | |
| Lja6g0050 | 211 | MobiDBLite | consensus disorder prediction | 174 | 211 | - | - | |
| Lja6g0050 | 211 | ProSiteProfiles | ALOG domain profile. | 60 | 187 | IPR006936 | - | |
| Lja6g0050 | 211 | Pfam | ALOG domain | 51 | 173 | IPR006936 | - | |
| Lja6g0050 | 211 | PANTHER | PROTEIN G1-LIKE2 | 31 | 206 | IPR040222 | - | |
| Lja6g0050 | 211 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lja6g0050 | Lja-Chr6 | 939548 | 942564 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lja6g0050 | - | - | vvi:104879291 | 258.84 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lja6g0050 | 6 | 939548 | 942564 | Lja6g0050 | 6 | 939548 | 942564 | ECH | |
| Lja6g0050 | 6 | 939548 | 942564 | Lja5g1602 | 5 | 17268418 | 17270300 | ECH | |
| Lja6g0050 | 6 | 939548 | 942564 | Lja1g1025 | 1 | 10181627 | 10182856 | ECH | |
| Lja6g0050 | 6 | 939548 | 942564 | Lja5g1847 | 5 | 21843694 | 21845901 | ECH | |
| Lja1g1025 | 1 | 10181627 | 10182856 | Lja6g0050 | 6 | 939548 | 942564 | PCT |