Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2850 ATGGCCGAAACTAGCTTGATTCTCACCACCACCACCGAGAAAATCAAATCACGAAAGCTGCTGCAATTCTCAACAATTTCCATCATCGATACCATTTTCGCCAAAAAGAGCTTCCTCTATGGCAAGCTTCCTTCCCAACCCTTCAGGCTCTCTGTCCTCAAATTGGACGGTTCTTCCTTTGATATTCAAGTTTCAAAGACGGCGAGTATTGCAGAGCTTAAGGATGCAGTGGAAGCGGTTTTTAGTCACATGCCTGAGAAGGGACCAGCAAAAATTTCATGGCCACATGTTTGGGGCCAGTTTTGCTTATGCTATGATGGGCAGAAGCTAGTTACGGAGGAGGATTATCTTAGAAATTATGGCATCAAGGATGGTGACGAGCTACATTTCATGCGCCATGTCTCAAACAATTGCACTGTTAGGAGAAAGCGGCCAAAGAAAAGAGTTCTCCGTTTGAAAAAACGAAGGAGGTCCAGGTCATCGCAAGTTAATAGCTGTGAACCCGAAGAAAATTGCAATGATGGTGAAGTTAGTTCTGATGGGGAAGAAGACCAAGAGAATGTGAAGACCAAGCATTGCATTGGAGAAGAAGAAGAAGAAGAGCATGTTGGGAAGAACAAGTTAACTGGCATTGTAGGAGAGCTGTTCTCATGCACCCCACTAGCGGTTGTGAGAAAAGCTAAATCTAAAAGCAGGAGTTGGTCATCTACGATTCCCAGATGTTTACTGGGCAGTTTCAGAAAGATTAGAAGGATTGTGTGCTTTGGCCGAAGGAGGCACTATTCTATGAGACTTACATGGAGTGAGTAA 810 0.442 MAETSLILTTTTEKIKSRKLLQFSTISIIDTIFAKKSFLYGKLPSQPFRLSVLKLDGSSFDIQVSKTASIAELKDAVEAVFSHMPEKGPAKISWPHVWGQFCLCYDGQKLVTEEDYLRNYGIKDGDELHFMRHVSNNCTVRRKRPKKRVLRLKKRRRSRSSQVNSCEPEENCNDGEVSSDGEEDQENVKTKHCIGEEEEEEHVGKNKLTGIVGELFSCTPLAVVRKAKSKSRSWSSTIPRCLLGSFRKIRRIVCFGRRRHYSMRLTWSE* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2850 269 MobiDBLite consensus disorder prediction 142 159 - -
Lja5g2850 269 SUPERFAMILY Ubiquitin-like 44 140 IPR029071 -
Lja5g2850 269 MobiDBLite consensus disorder prediction 142 201 - -
Lja5g2850 269 MobiDBLite consensus disorder prediction 182 201 - -
Lja5g2850 269 Pfam Ubiquitin-like domain 49 134 IPR040610 -
Lja5g2850 269 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 3 266 IPR039690 GO:0000398|GO:0005689
Lja5g2850 269 SMART ubq_7 48 133 IPR000626 GO:0005515
Lja5g2850 269 CDD Ubl_SNRNP25 48 133 IPR040610 -
Lja5g2850 269 Gene3D - 42 141 - -
Lja5g2850 269 PANTHER - 3 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2850 Lja-Chr5 56074759 56081119 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2850 - - aprc:113846519 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2850 5 56074759 56081119 Lja5g2850 5 56074759 56081119 ECH
Lja1g3889 1 49036823 49038918 Lja5g2850 5 56074759 56081119 ECH
Lja5g2850 5 56074759 56081119 Lja1g3890 1 49042528 49049163 PCT