Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3890 ATGGCAAACATGGTTATGGCTTCCTCAAAACCCCTCATTCCTCCACTTCCCATCTCCAATTCCCTCCCCCCAACACCCAGACTCCAAATCTCCCTCCCAAAACTCCCACTCAAACTCAAACACCAAATCCCAAATCTCAAATCATCCCTCTCTTCCCTTCTGGCGGCGAGCTCACTGTCACTACTCGCCTTTGCTCCACCATCCCTGGCGGAGGAAATCGAGAAAGCCGCGCTGTTCGATTTCAACCTGACACTCCCGATCATAGTGGCGGAGTTTCTTTTCCTGATGGTTGCTCTTGACAAGATTTACTTCTCCCCGCTCGGGAAGTTCATGGACGACAGGGACGCGGCGATTAGGGAGAAGCTGAACAGCGTGAAGGACACTTCGTCGGAGGTGAAGCAGCTGGAGGAGCAGGCGAACGCGGTGTTGAAGGCGGCGCGTGCGGAGATATCGGCGGCGTTGAATAAGATGAAGAAGGAGACGCAGGTGGAGGTGGAGCAGAAGATTGCGGAGGGGAGATTGAAGGTGGATGCTGAGTTGCAGGAGGCTCTTGCTAATTTGGAGAAACAGAAGGAAGAGACTATCAAGTCTCTTGATTCTCAGATTGCAGCTCTTAGCCAAGACATTGTTAAAAAGGTTCTTCCTAGTGCATAG 654 0.5199 MANMVMASSKPLIPPLPISNSLPPTPRLQISLPKLPLKLKHQIPNLKSSLSSLLAASSLSLLAFAPPSLAEEIEKAALFDFNLTLPIIVAEFLFLMVALDKIYFSPLGKFMDDRDAAIREKLNSVKDTSSEVKQLEEQANAVLKAARAEISAALNKMKKETQVEVEQKIAEGRLKVDAELQEALANLEKQKEETIKSLDSQIAALSQDIVKKVLPSA* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3890 217 Coils Coil 118 163 - -
Lja1g3890 217 Hamap ATP synthase subunit b' [atpF2]. 78 215 IPR034679 GO:0015078|GO:0015986|GO:0045263
Lja1g3890 217 Coils Coil 173 208 - -
Lja1g3890 217 PANTHER ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC 1 216 - -
Lja1g3890 217 PANTHER ATP SYNTHASE SUBUNIT B', CHLOROPLASTIC 1 216 - -
Lja1g3890 217 Pfam ATP synthase B/B' CF(0) 85 214 IPR002146 GO:0015078|GO:0015986|GO:0045263
Lja1g3890 217 Hamap ATP synthase subunit b [atpF]. 79 216 IPR002146 GO:0015078|GO:0015986|GO:0045263
Lja1g3890 217 CDD ATP-synt_Fo_b 84 214 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3890 K02109 - cpap:110806430 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3890 1 49042528 49049163 Lja1g3890 1 49042528 49049163 ECH
Lja5g2850 5 56074759 56081119 Lja1g3890 1 49042528 49049163 PCT