Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3889 ATGATCAATCAGATTCCTTCTTCTCCTATGATGATCGTCAATGACAGTTTTCTCTATCACAGGCTTCCTTCCCAAACCCTTAAACTCTCCATCCTCAAATTGGATGCCTCTTCCTTCTATGTTGAAGTTGCAAAGACGGCAAATGTAGCAGAACTCAAGAAGGCGGTGGAGGCGACTTTCGGTTACATGCCTCAGAAGGGGCCAGGGAAAATATCATGGCCACATGTTTGGGGGCAATTTTGCTTAAGCTATGAAGGACACAAGCTAGTTACTGATACGGATTATCTCAGAGATTATGGCATCAAGGATGGTAATCAGCTTCAATTCATACCCCATGTATCCAACATATCCAACACCAGCAGTTTTCAAAGAAGGGGGTTGAAGAAGCGAGTTGTCAAATTGAAACAACTTAGGAGGCATCCAAGGAAAGAACATGGTGGTGATGGCGAAATTTGTTTGGATGATATAGAGACAGGGAATACTCAAAATTGGAATGCACAAGAAAATAGCTCTGGAAAGAGCAGGTTAACTCGATTTTTTGAAGGGTTATTCTCACACACCCGGCAATCAGTTGTGAGAAGAGCAAAAATTGAAGCCAGGATCTGGCCCTCAGTGATTTCCAAAGGTGTAGTGAGCAGTTTTAGGAAAATTAGAAGAATTTTATGCTATTGCAGGAGGCAGTGCTACATTAGAAGACACTCATGGAGAGAATTTTCAATATAG 723 0.4191 MINQIPSSPMMIVNDSFLYHRLPSQTLKLSILKLDASSFYVEVAKTANVAELKKAVEATFGYMPQKGPGKISWPHVWGQFCLSYEGHKLVTDTDYLRDYGIKDGNQLQFIPHVSNISNTSSFQRRGLKKRVVKLKQLRRHPRKEHGGDGEICLDDIETGNTQNWNAQENSSGKSRLTRFFEGLFSHTRQSVVRRAKIEARIWPSVISKGVVSSFRKIRRILCYCRRQCYIRRHSWREFSI* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3889 240 Pfam Ubiquitin-like domain 27 113 IPR040610 -
Lja1g3889 240 CDD Ubl_SNRNP25 27 112 IPR040610 -
Lja1g3889 240 PANTHER - 8 234 - -
Lja1g3889 240 SUPERFAMILY Ubiquitin-like 23 114 IPR029071 -
Lja1g3889 240 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 8 234 IPR039690 GO:0000398|GO:0005689
Lja1g3889 240 Gene3D - 22 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3889 Lja-Chr1 49036823 49038918 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3889 - - gmx:100790105 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3889 1 49036823 49038918 Lja1g3889 1 49036823 49038918 ECH
Lja1g3889 1 49036823 49038918 Lja5g2850 5 56074759 56081119 ECH