Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2805 ATGGAGCTAATGGGTGTTGGGAAACTCAAGGGGTGTTTTGTTCTTGTGTTTTTTGCTGCTTCACTGTTGGTGGGTATGGTGGGTGGAATTGGTGTGAATTGGGGTACACAATCAACACACCCTTTGCCAGCTTCCACAGTGGTGAAAATGCTGAGAGACAATGGTATTCAGAAAGTGAAGCTTTTTGATGCTGATCCTGATATTTTGAATGCTTTGAAGAGGTCTGGGATTCAGGTGATGGTGGGTATACCAAATGATTTGCTTTACACTATGGCTAATAGTCTTCAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCAGCTCATGTCTCATCTGGAGGAGTAGACATCAGGTACGTCGCAGTGGGAAATGAACCTTTCTTGGCAACTTACAATGGAACCTTTGAAGCCACAACACTTCCAGCTCTTCAAAATATCCAATCAGCTCTCGTAAAAGCTGGTTTGGGAAATCAGGTTAAAGTGACATGCCCTCTAAATGCTGATGTGTATCTGAGCTCATCAGATAAACCTTCTGACGGGGACTTCAGGCCAGACATCCAAAACCTCATGCTGCAGATTGTCAAGTTCTTGAGCCAGAACAACGCACCATTCACCGTGAATATCTATCCTTTTATCAGCCTTTATTCAGATGCCAATTTTCCAGGTGATTATGCGTTTTTCAATGGCTTTCAGTCTCCCATAACCGACAATGGAAAGATCTACGACAATGTCCTTGATGCTAACTACGACACTCTAGTATGGGCGTTGCAGAAGAATGGCTTTGGAAACTTGCCTATAATTGTTGGAGAAATCGGGTGGCCTACAGACGGAGACCGAAACGCGAACCTTCAGTACGCGCAGCGTTTCAACCAAGGCTTCATGTCGCGCTATGTTGCTGGAAAGGGGACTCCAATGAGGCCTGGTCCTCTAGATGCATACTTGTTTAGCTTGTTAGATGAAGATAACAAGAGCATTCAGCCGGGTAATTTCGAAAGACATTGGGGTTTGTTTTACTTTGATGGACAACCGAAATACCAGCTTAGCATGGGATCAAGAAACAATGCCTTAGTAGGCGCTACTGGTGTAGCATATCTTGCTAAGAAGTGGTGTATTATGAAACCCTCTGCAAACCTCAATAATGATCAACTGGCACCAAGTGTGTCTTATGCTTGTTCACACGCTGATTGCACGAGTCTTGGGTATGGAACTTCTTGTGGGAATTTGGATATTCACGGTAATATCTCATATGCATTTAATAGCTACTTCCAGATAAATGACCAGATTGATAGTGCTTGCAAATTCCCTGGCGGCCTTTCTGTTGTCACTGACAGAGATCCTTCAATTGGAGATTGCAAGTTCAAAATCATGATCCAGACAGATTCTGCTGTCACATATGGGAATGGGAGAATTTGGTCTCTTAGAATTGTGCTTTCTGTGTTTTTGTTTTTGGTTCTTATGTAA 1461 0.4312 MELMGVGKLKGCFVLVFFAASLLVGMVGGIGVNWGTQSTHPLPASTVVKMLRDNGIQKVKLFDADPDILNALKRSGIQVMVGIPNDLLYTMANSLQAAEKWVSKNVSAHVSSGGVDIRYVAVGNEPFLATYNGTFEATTLPALQNIQSALVKAGLGNQVKVTCPLNADVYLSSSDKPSDGDFRPDIQNLMLQIVKFLSQNNAPFTVNIYPFISLYSDANFPGDYAFFNGFQSPITDNGKIYDNVLDANYDTLVWALQKNGFGNLPIIVGEIGWPTDGDRNANLQYAQRFNQGFMSRYVAGKGTPMRPGPLDAYLFSLLDEDNKSIQPGNFERHWGLFYFDGQPKYQLSMGSRNNALVGATGVAYLAKKWCIMKPSANLNNDQLAPSVSYACSHADCTSLGYGTSCGNLDIHGNISYAFNSYFQINDQIDSACKFPGGLSVVTDRDPSIGDCKFKIMIQTDSAVTYGNGRIWSLRIVLSVFLFLVLM* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2805 486 Gene3D - 364 464 - -
Lja5g2805 486 Gene3D Glycosidases 29 356 - -
Lja5g2805 486 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 20 463 - -
Lja5g2805 486 SMART X8_cls 368 453 IPR012946 -
Lja5g2805 486 ProSitePatterns Glycosyl hydrolases family 17 signature. 264 277 IPR000490 GO:0004553|GO:0005975
Lja5g2805 486 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 20 463 IPR044965 GO:0004553|GO:0005975
Lja5g2805 486 Pfam Glycosyl hydrolases family 17 30 348 IPR000490 GO:0004553|GO:0005975
Lja5g2805 486 SUPERFAMILY (Trans)glycosidases 30 348 IPR017853 -
Lja5g2805 486 Pfam X8 domain 368 436 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2805 Lja-Chr5 55347489 55352376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2805 13 485 Glycoside Hydrolase AT4G31140 70.440 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2805 K19893 - gmx:100790297 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2805 5 55347489 55352376 Lja1g4569 1 59803624 59805341 PCT
Lja1g3812 1 48064833 48068897 Lja5g2805 5 55347489 55352376 PCT