Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3812 ATGTTTATTATGGGGTTAATGGGAGGTGCAAAGTTTACTACTTCGTGTGTTGTTCTCTTGTTCATGAACACCCTGTTGGTGGGTTCTGTGAGTGGAATTGGTGTGAACTGGGGAACGCAATCAACACACCCTTTGTCACCATCCACGGTGGTGAAAATGCTGAAAGACAATGGCATTCAGAAGGTTAAGCTTTTTGATGCTGACCCAAGTATCTTGGGTGCTCTCAAGAAATCAGGGATTCAGGTGATGGTGGGCATTCCAAATGACATGCTTTACTCTCTGGCTAATAGTGTGCAAGCAGCTGAAAAATGGGTTTCCAAGAATGTTTCTGCGCATGTTTCCAAAGGTGGAGTAGACATCAGATACGTTGCAGTGGGGAATGAACCATTCTTGTCAACATACAATGGCACATTTGAAGCCACAACTCTTCCAGCTCTTAAAAACATCCAGGCAGCTCTAACAAAATCCGGTTTGAGCAACCGGGTCAAGGTCACTGTCCCTTTGAACGCCGATGTATATCAGAGCTCAACGGAGAAGCCATCTGACGGAGATTTCCGGCCGGACATCAACAATGTGATGCTGGACATTGTCAAGTTCTTAAACGACAATGGAGCTCCATTCACTGTGAACATCTACCCTTTCATCAGCCTCTACTCAGACCCCAATTTCCCTGTTGACTATGCTTTCTTCAATGGCTACCAGTCTTCCATAAATGACAATGGAAGGACCTATGACAATGTGTTTGATGCTAACCATGACACTCTAGTATGGGCATTGCAGAAGCATGGTTTTGGAAGCTTGCCTATAATTGTTGGAGAAATTGGGTGGCCTACAGATGGAGACAGAAATGCAAATATTCAATATGCACAACGTTTTAACCAAGGTTTCATGTCGCGCTATGCTTCTGGAAAGGGTACTCCAATGAGGCAAGGTCCTATAGATGCATACTTGTTCAGTCTTGTGGATGAAGATGACAAGAGCATTCAGCCAGGGAACTTTGAACGCCATTGGGGGCTGTTTTACTTTGATGGACAACCCAAGTACCCGGTGAATCTTATTCGTTCATCACAACACAATGGTTTGGTAGGTGCTAGTGGTGTTGATTATCTTTCCAAAAAGTGGTGTGTTTTGAAACCCTCGGCAAACCTTAATGATGATCAATTGGCACCAAGTGTGACCTATGCTTGTGAAAATGCTGATTGCACTAGTCTGGGGTATGGGACCACATGTGGCAATTTGGATGTTCAGGGGAACATCTCTTATGCATTTAATAGCTACTTTCAGAGAAATGACCAGATGGATTCTGCTTGCAAATTCTCTGGCCTTGCCATGGTCACTGACAAAGATCCTTCAGGTGGAAGTTGCAAATTCAGAATCATGATCCAGACAAATTCTGCAAGGCTAAATGAGAGTGTTGGGTATCTAAGAACAGTGCTCTTTGGTTTTGTTACTTTACTACTTTTGTGTAATCTTCCATTTTGA 1482 0.4352 MFIMGLMGGAKFTTSCVVLLFMNTLLVGSVSGIGVNWGTQSTHPLSPSTVVKMLKDNGIQKVKLFDADPSILGALKKSGIQVMVGIPNDMLYSLANSVQAAEKWVSKNVSAHVSKGGVDIRYVAVGNEPFLSTYNGTFEATTLPALKNIQAALTKSGLSNRVKVTVPLNADVYQSSTEKPSDGDFRPDINNVMLDIVKFLNDNGAPFTVNIYPFISLYSDPNFPVDYAFFNGYQSSINDNGRTYDNVFDANHDTLVWALQKHGFGSLPIIVGEIGWPTDGDRNANIQYAQRFNQGFMSRYASGKGTPMRQGPIDAYLFSLVDEDDKSIQPGNFERHWGLFYFDGQPKYPVNLIRSSQHNGLVGASGVDYLSKKWCVLKPSANLNDDQLAPSVTYACENADCTSLGYGTTCGNLDVQGNISYAFNSYFQRNDQMDSACKFSGLAMVTDKDPSGGSCKFRIMIQTNSARLNESVGYLRTVLFGFVTLLLLCNLPF* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3812 493 SUPERFAMILY (Trans)glycosidases 33 351 IPR017853 -
Lja1g3812 493 ProSitePatterns Glycosyl hydrolases family 17 signature. 267 280 IPR000490 GO:0004553|GO:0005975
Lja1g3812 493 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 470 IPR044965 GO:0004553|GO:0005975
Lja1g3812 493 Gene3D - 369 469 - -
Lja1g3812 493 Pfam Glycosyl hydrolases family 17 33 351 IPR000490 GO:0004553|GO:0005975
Lja1g3812 493 Gene3D Glycosidases 32 359 - -
Lja1g3812 493 Pfam X8 domain 373 444 IPR012946 -
Lja1g3812 493 SMART X8_cls 373 457 IPR012946 -
Lja1g3812 493 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE 5 19 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3812 Lja-Chr1 48064833 48068897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3812 12 466 Glycoside Hydrolase AT4G31140 68.132 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3812 K19893 - gmx:100796552 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3812 1 48064833 48068897 Lja5g2805 5 55347489 55352376 PCT