Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4569 ATGGCTCGAGCCATGTTCACCATATGGGCACTTTTCTTGATTCAGATCCTAGCTCAAGGTGCCAATGGTGCAGAGAGCATTCCAGGCCTTGGTGTCAATTGGGGTGCACTAGCATCCCACTCTTTGGATCCTAGTATTGTTGTGGCTATGCTGAAGGACAATGGAATCAAAAAGGTTAAACTTTTTGATGCAGATTCTTGGACCGTGAGTGCTTTTTCTGGGACAGATATTGAGGTCATGGTTGGAATTCCTAATGATCAATTGAGTAATTTTGCTGGAAGCTACGGCGATGCAGAGGATTGGGTACAAGAAAATGTTACCGAACATCTTCATAAGGGAGGAGTCAACATCAGATATGTGGTTGTTGGAAATGAGCCATTCTTGGAAAGTTACAATGGTTCATACATAAAGGCCACATTCCCAGCAATGCAAAACATTCAAAAGGCCATTGATAAAGCTGGTGTTGGTGACAAAGTGAAGGTGACTACAGCTATGAATGCTGATGTTTACGAGTCTGCTACAAACCAACCTTCAGAAGGAGATTTCAGAAGTGGAATTCACGATCTCATGAAACAGATTGTACATTTTCTTCATGAAAAGAATTCACCATTTCTTGTCAACATATACCCTTTCCTCAGTCTCTATCAAAATGAAGGTTTCCCTCAAGAATTTGCATTCTTTGATAGCCAGAGTAGCACAATTAGTGACAAGAATGCACAATATAGTAATATGTTTGATGCAAATTTAGACACACTTGTGTGGGCATTGAAAAAGGCTGGTTACCCTGACTTGAGAATTGTGGTTGGTGAAGTTGGATGGCCAACTGATGGTGACAAAAATGCAAACCCCAACAACGCAAAAAAATTCTACCAAGGGTTCCTAAAGAAAATGGCAAGCAAAAAAGGAACACCAATGCGACCAGGACCTATGGACGTGTACCTATTTTCCCTCTTTGATGAAAACTTGAAGAGCATTGCACCCGGTAACTTCGAGCGTCATTGGGGGATTTTTGGCTACGATGGGAAACCGAAGTTTCCTATAGATTTTTCAGGCCAGGGTCAAGAGAAATGGCCCGTGGCGGCGAAAGGGGTTCGGTACCAAGAGCATAAATGGTGTGTCCTCAACCGCGATGTCAAAAACTTCAGCCTCGTGCCAGATGCGTTGAGCTATGCTTGCGCCGGTGCTGATTGCACAAGCTTAGGAATGGGATGTTCTTGTGGGAACTTGGATGTAGCTGGGAATGCTTCTTATGCTTTCAACCAATATTATCAGACAAGGGACCAAAGCGTTGAGGCGTGTGACTTCAATGGAATTGCCAACATTGTTACGGAGGATCCATCAAAGGGAAGTTGTGTGTTCCCTATAGAAATTGAGAGTAGTGGAGAGATGCTCAGAGCAATGCATATATTGGGAAGCATTTTGATTGGATTATCATTGTTTCATGTAACGTTTATGTAA 1458 0.4273 MARAMFTIWALFLIQILAQGANGAESIPGLGVNWGALASHSLDPSIVVAMLKDNGIKKVKLFDADSWTVSAFSGTDIEVMVGIPNDQLSNFAGSYGDAEDWVQENVTEHLHKGGVNIRYVVVGNEPFLESYNGSYIKATFPAMQNIQKAIDKAGVGDKVKVTTAMNADVYESATNQPSEGDFRSGIHDLMKQIVHFLHEKNSPFLVNIYPFLSLYQNEGFPQEFAFFDSQSSTISDKNAQYSNMFDANLDTLVWALKKAGYPDLRIVVGEVGWPTDGDKNANPNNAKKFYQGFLKKMASKKGTPMRPGPMDVYLFSLFDENLKSIAPGNFERHWGIFGYDGKPKFPIDFSGQGQEKWPVAAKGVRYQEHKWCVLNRDVKNFSLVPDALSYACAGADCTSLGMGCSCGNLDVAGNASYAFNQYYQTRDQSVEACDFNGIANIVTEDPSKGSCVFPIEIESSGEMLRAMHILGSILIGLSLFHVTFM* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4569 485 SMART X8_cls 370 453 IPR012946 -
Lja1g4569 485 SUPERFAMILY (Trans)glycosidases 30 349 IPR017853 -
Lja1g4569 485 Pfam X8 domain 370 439 IPR012946 -
Lja1g4569 485 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 20 467 IPR044965 GO:0004553|GO:0005975
Lja1g4569 485 Pfam Glycosyl hydrolases family 17 30 349 IPR000490 GO:0004553|GO:0005975
Lja1g4569 485 ProSitePatterns Glycosyl hydrolases family 17 signature. 264 277 IPR000490 GO:0004553|GO:0005975
Lja1g4569 485 Gene3D - 366 460 - -
Lja1g4569 485 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 20 467 - -
Lja1g4569 485 Gene3D Glycosidases 29 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4569 Lja-Chr1 59803624 59805341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4569 24 471 Miscellaneous Gene Families AT5G64790 56.920 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4569 - - gmx:100794658 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2805 5 55347489 55352376 Lja1g4569 1 59803624 59805341 PCT