Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g2283 ATGATGCAGCGGCCTCCACCTGAAGATTTTCTGTTGAAGGAGACCAAGCCCCACCTTGGTGGGGGAAAGGTTTCTGGTGATAGACACACAAGCACCTATGACCTTGTTGAGCAAATGCAATACCTTTATGTGAGGGTTGTTAAGGCTAAAGACCTTCCGGGGAAAGATGTCACCGGTGGCGTTGATCCTTATGTTGAAGTCAAGCTGGGGAACTACAAAGGCACCACCAGGCACTTTGAGAAGAGAAGCAATCCTGAATGGAGCCAGGTTTTTGCTTTCTCGAAGGACCGGCTTCAGGCTTCGGTGCTGGAGGTTATTGTGAAGGATAAGGATGTTGTGAAGGATGATTTCATTGGGCGTGTCTGGTTTGACCTCAATGAGATCCCGAAACGGGTGCCGCCGGATAGTCCTCTGGCGCCGCAGTGGTATAGGCTCGAGGACAGAAAGGGGGACAAGGCGAAGGGAGAGCTAATGCTGGCTGTTTGGATGGGCACACAGGCTGATGAAGCTTTTCCTGAAGCTTGGCATTCTGATGCTGCAACAGTTAGTGGGACGGATGCTCTAGCGAACATTAGGTCGAAAGTGTACCTGTCTCCTAAGCTTTGGTATTTGAGGGTTAATGTAATTGAGGCACAAGACTTGCAACCAACTGATAAGGGGAGGTATCCTGATGTTTCTGTGAAGGCTGTTCTGGGGAATCAGGCCTTGAGGACTAGAATCTCTCAGAGTAGGAGCATCAATCCATTGTGGAATGAGGATTTGATGTTTGTTGCAGCAGAACCGTTTGAGGAGCACCTGATTTTAAGCGTGGAAGACAGAGTCGCGCCGAACAAAGATGAATTACTGGGGAGGTGTATTATTCCTTTGCAGTTTGTGGACAGGAGACTAGATCACAAACCTGTGAACACTAGATGGTTTAATCTGGAAAGGCATGCTGTCGTGGAGGGAGAAAAGAAGAAAGAAGTCAAATTTGCAAGTAGGATTCACATGAGGATTTGTCTCGAGGGCGGTTACCATGTTTTGGATGAATCAACTCACCACAGCAGCGATCTTCGTCCAACCGCGAAACAGCTGTGGAAGTCCGGTATCGGTGTTCTTGAGCTTGGGATATTGAATGCTCAGGGTTTGATGCCGATGAAAACAAAAGATGGGAGGGGGACAACAGATGCTTACTGTGTAGCGAAATATGGGCAGAAGTGGGTCCGGACTAGGACAATCATTGATAGCTCTACACCGAGGTGGAATGAACAATATACATGGGAGGTTTTTGATCCTTGCACTGTCATTACAATTGGTGTATTTGATAACTGTCATTTGCATGGTGGTGAGAAGGCTGGAGGGACAAAGGATTCGAGGATCGGGAAGGTAAGAATTCGTCTTTCCACCCTTGAGACAGATAGAGTCTACACACACTCCTATCCACTTTTAGTCCTTCACCCCAATGGGCTGAAAAAAATGGGTGAAATTCATTTGGCTGTGAGGTTCACTTGTTCTTCTTTGCTCAACATGATGCACATGTATTCACATCCCTTGTTGCCAAAGATGCACTACATACACCCTTTGACTGTTACCCAGCTTGACAGCTTAAGGCATCAAGCTACTCAGATTGTTTCAATGCGGCTGAGTCGCGCTGAGCCGCCGCTGAGAAAGGAGGTTGTGGAATATATGCTGGATGTGGGTTCCCACATGTGGAGCATGAGAAGAAGCAAGGCTAATTTCTTCAGGATCATGGGAGTTCTGAGTGCATTAATTGCTGTTGGAAAATGGTTTGATCAGATTTGCAATTGGAAAAGTCCAATCACAACCATTCTGATCCATATCTTGTTTATTATACTGGTTATGTACCCTGAGCTTATCTTACCCACAGCTTTCCTTTACCTCTTCCTTATTGGAATTTGGCACTACAGATGGAGGCCAAGGCACCCTCCTCACATGGACACTCGTCTTTCTCATGCGGATTCAGCACACCCTGATGAGCTAGATGAGGAATTCGACACATTCCCGACCTCCCGGCCTTCTGATATCGTCCGGATGAGATATGACAGGCTTAGGAGCATTGCTGGGAGGATTCAGACTGTTGTTGGGGACTTGGCCACTCAAGGGGAAAGGCTGCAGTCTTTGCTCAGCTGGCGCGATCCGAGAGCCACTGCCCTGTTTGTGATTTTCTGCCTGATTGCTGCTAGTGTGCTGTATGTGACTCCATTCCAAGTTGTGGCCTTCTTGGCTGGAATTTATGTGTTGAGACACCCCAGGTTTCGCCATAAGCTTCCTTCGACACCGCTGAATTTCTTTAGGAGGTTGCCTGCAAGAACTGACTCCATGCTTTGA 2328 0.4759 MMQRPPPEDFLLKETKPHLGGGKVSGDRHTSTYDLVEQMQYLYVRVVKAKDLPGKDVTGGVDPYVEVKLGNYKGTTRHFEKRSNPEWSQVFAFSKDRLQASVLEVIVKDKDVVKDDFIGRVWFDLNEIPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPDVSVKAVLGNQALRTRISQSRSINPLWNEDLMFVAAEPFEEHLILSVEDRVAPNKDELLGRCIIPLQFVDRRLDHKPVNTRWFNLERHAVVEGEKKKEVKFASRIHMRICLEGGYHVLDESTHHSSDLRPTAKQLWKSGIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSSTPRWNEQYTWEVFDPCTVITIGVFDNCHLHGGEKAGGTKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGLKKMGEIHLAVRFTCSSLLNMMHMYSHPLLPKMHYIHPLTVTQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLSALIAVGKWFDQICNWKSPITTILIHILFIILVMYPELILPTAFLYLFLIGIWHYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLIAASVLYVTPFQVVAFLAGIYVLRHPRFRHKLPSTPLNFFRRLPARTDSML* 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g2283 775 ProSiteProfiles C2 domain profile. 182 306 IPR000008 -
Lja5g2283 775 MobiDBLite consensus disorder prediction 9 23 - -
Lja5g2283 775 CDD C2B_MCTP_PRT_plant 41 165 - -
Lja5g2283 775 Pfam Plant phosphoribosyltransferase C-terminal 620 775 IPR013583 -
Lja5g2283 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 202 355 IPR035892 -
Lja5g2283 775 ProSiteProfiles C2 domain profile. 23 143 IPR000008 -
Lja5g2283 775 SMART C2_3c 41 137 IPR000008 -
Lja5g2283 775 SMART C2_3c 203 301 IPR000008 -
Lja5g2283 775 SMART C2_3c 365 472 IPR000008 -
Lja5g2283 775 ProSiteProfiles C2 domain profile. 347 473 IPR000008 -
Lja5g2283 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 364 504 IPR035892 -
Lja5g2283 775 Gene3D C2 domain 340 497 IPR035892 -
Lja5g2283 775 Gene3D C2 domain 40 162 IPR035892 -
Lja5g2283 775 Pfam C2 domain 202 308 IPR000008 -
Lja5g2283 775 Pfam C2 domain 365 475 IPR000008 -
Lja5g2283 775 Pfam C2 domain 41 134 IPR000008 -
Lja5g2283 775 CDD C2C_MCTP_PRT_plant 203 353 - -
Lja5g2283 775 Gene3D C2 domain 189 333 IPR035892 -
Lja5g2283 775 CDD C2D_MCTP_PRT_plant 365 492 - -
Lja5g2283 775 MobiDBLite consensus disorder prediction 1 27 - -
Lja5g2283 775 PANTHER PROTEIN QUIRKY-LIKE 2 775 - -
Lja5g2283 775 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 2 775 - -
Lja5g2283 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 41 178 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g2283 Lja-Chr5 40644587 40647979 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g2283 2 775 Lipid Metabolism Gene Families AT3G57880 89.922 0.0 1469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g2283 - - csv:101204035 1462.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g2283 5 40644587 40647979 Lja3g4067 3 80023007 80025454 ECH
Lja5g2283 5 40644587 40647979 Lja5g2283 5 40644587 40647979 ECH
Lja1g1238 1 12774395 12778122 Lja5g2283 5 40644587 40647979 PCT