Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1238 ATGCAGAAGATGCAGAGACCGCCGCCGGAAGATTTTCTGTTGAAGGAGACCAAGCCCCACCTTGGAGGGGGGAAGGTCTCCGGTGACAAGCATACTAGCACCTATGATCTTGTTGAGCAAATGCAGTACCTTTATGTGAGGGTTGTGAAGGCTAAGGATTTGCCTTCCAAGGATGTCACTGGAAGCTGTGATCCTTATGTTGAAGTCAAGCTGGGAAACTACAAAGGCACAACCCGGCACTTTGAGAAGAAGACTAATCCTGAATGGAGCCAGGTTTTCGCTTTCTCCAAGGACAGGATTCAGGCTTCAGTGCTTGAGGTTACTGTGAAAGATAAGGATTTCGTGAAGGATGACTTCATTGGTCGTGTTTGGTTTGACCTCAATGAGATCCCAAAGAGGGTTCCGCCTGACAGCCCTCTCGCGCCGCAGTGGTATAGGCTGGAGGAGAGAAAGGGCGATAAGGCGAGGGGGGAGCTGATGCTTGCTGTTTGGATGGGGACACAAGCTGATGAAGCGTTTCCTGAGGCGTGGCACTCGGATGCTGCAACAGTTAGTGGGACTGATGCTCTTGCTAACATTCGGTCGAAGGTGTATCTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATAGAGGCACAGGACTTGCAGCCAAGTGACAAGGGAAGATTCCCGGAGGTTTTTGTGAAGGCTATTCTGGGAAATCAGACCTTGAGGACCAGAATCTCTCAGAGCAGGACTATCAATCCAATGTGGAATGAGGATTTGATGTTTGTCGCTGCGGAACCATTTGAGGAGCCGCTGATTTTGAGCGTGGAAGACAGAGTTGCCCCTAACAAAGAGGAAATGCTGGGAAGGTGCGCAATTCCTTTACACCTAATGGACAGGAGATTGGATCACAAACCTGTGAATACTAGATGGTTTAATCTTGAGAAGCATGTTATTATCATGGAAGGGGAAAAGAAGAAGGAAATCAAGTTTGCGAGCAGGATTCATATGAGGGTCTGTCTCGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACTGCAAAACAGCTCTGGAAGTCCAGCATTGGAGTTCTTGAATTGGGGATATTGAATGCTCAGGGTTTGATGCCAATGAAGACAAAAGATGGGAGGGGGACGACTGATGCTTATTGTGTAGCGAAATATGGGCAGAAGTGGGTGCGAACGAGGACCATCATTGATAGCTTTACACCGAGGTGGAATGAGCAGTACACTTGGGAGGTCTTTGATCCTTGCACTGTCATTACACTTGGTGTATTTGATAACTGTCATTTGCACAATGGCGACAAGCCTGGAGGGGCGAAAGATTCAAGAATTGGGAAGGTGCGAATCCGTCTTTCCACACTTGAGACTGATCGAGTCTATACACATTCCTATCCTCTGCTAGTCCTTCATCCAAATGGGGTGAAGAAAATGGGTGAGATTCACTTGGCTGTAAGGTTTACTTGTTCTTCTTTGCTTAACATGATGCACATGTATTCACATCCCTTGTTGCCAAAGATGCATTACATTCACCCATTGACTGTAAGCCAGCTTGACAGCTTGAGGCATCAAGCTACTCAGATTGTGTCAATGAGACTGAGCCGCGCCGAGCCGCCATTGAGAAAGGAGATAGTGGAATACATGCTGGATGTGGGTTCCCACATGTGGAGCATGAGACGAAGCAAGGCCAATTTCTTCAGAATCATGGGAGTTTTGAGTGGACTAATTGCTGTAGGGAAATGGTTTGATCAGATCTGTAACTGGAAAAATCCGATCACAACGGTTCTGATCCATATTCTGTTTATAATACTGGTCATGTACCCTGAGCTTATCTTACCCACAATATTCCTTTACCTCTTCTTGATTGGAGTTTGGTACTACAGATGGAGGCCAAGGCACCCTCCTCACATGGACACACGCCTCTCGCATGCGGATTCTGCGCACCCAGATGAGCTTGATGAGGAGTTCGACACATTCCCTACCAGCAGGCCTTCTGATATTGTGAGGATGAGATACGACAGGCTTAGGAGCATTGCTGGGAGGATTCAGACTGTGGTTGGAGATTTGGCCACTCAAGGGGAGAGGTTGCAGTCTTTGCTCAGCTGGAGAGATCCAAGAGCCACTGCACTGTTTGTGATTTTCTGTTTGGTTGCTGCCATTGTTCTCTATGTCACACCATTCCAAGTTGTGGCACTTCTCACTGGAATTTATGTGTTGCGACATCCGAGGTTCCGCCATAAGCTTCCTTCTGTGCCGCTGAATTTCTTCAGGAGGCTGCCTGCAAGAACTGACTGCATGCTTTGA 2337 0.4745 MQKMQRPPPEDFLLKETKPHLGGGKVSGDKHTSTYDLVEQMQYLYVRVVKAKDLPSKDVTGSCDPYVEVKLGNYKGTTRHFEKKTNPEWSQVFAFSKDRIQASVLEVTVKDKDFVKDDFIGRVWFDLNEIPKRVPPDSPLAPQWYRLEERKGDKARGELMLAVWMGTQADEAFPEAWHSDAATVSGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRFPEVFVKAILGNQTLRTRISQSRTINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKEEMLGRCAIPLHLMDRRLDHKPVNTRWFNLEKHVIIMEGEKKKEIKFASRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSFTPRWNEQYTWEVFDPCTVITLGVFDNCHLHNGDKPGGAKDSRIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCSSLLNMMHMYSHPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTSRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1238 778 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 204 358 IPR035892 -
Lja1g1238 778 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g1238 778 PANTHER PROTEIN QUIRKY-LIKE 4 778 - -
Lja1g1238 778 Pfam C2 domain 43 136 IPR000008 -
Lja1g1238 778 Pfam C2 domain 368 478 IPR000008 -
Lja1g1238 778 Pfam C2 domain 204 310 IPR000008 -
Lja1g1238 778 ProSiteProfiles C2 domain profile. 350 476 IPR000008 -
Lja1g1238 778 ProSiteProfiles C2 domain profile. 25 145 IPR000008 -
Lja1g1238 778 Gene3D C2 domain 343 499 IPR035892 -
Lja1g1238 778 ProSiteProfiles C2 domain profile. 184 308 IPR000008 -
Lja1g1238 778 CDD C2C_MCTP_PRT_plant 205 356 - -
Lja1g1238 778 CDD C2B_MCTP_PRT_plant 43 167 - -
Lja1g1238 778 Gene3D C2 domain 191 335 IPR035892 -
Lja1g1238 778 Gene3D C2 domain 25 165 IPR035892 -
Lja1g1238 778 Pfam Plant phosphoribosyltransferase C-terminal 623 778 IPR013583 -
Lja1g1238 778 PANTHER C2 CALCIUM/LIPID-BINDING PLANT PHOSPHORIBOSYLTRANSFERASE FAMILY PROTEIN 4 778 - -
Lja1g1238 778 SMART C2_3c 205 303 IPR000008 -
Lja1g1238 778 SMART C2_3c 43 139 IPR000008 -
Lja1g1238 778 SMART C2_3c 368 475 IPR000008 -
Lja1g1238 778 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 367 507 IPR035892 -
Lja1g1238 778 MobiDBLite consensus disorder prediction 9 25 - -
Lja1g1238 778 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 43 180 IPR035892 -
Lja1g1238 778 CDD C2D_MCTP_PRT_plant 368 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1238 Lja-Chr1 12774395 12778122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1238 4 778 Lipid Metabolism Gene Families AT3G57880 91.226 0.0 1494
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1238 - - gmx:100818371 1519.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1238 1 12774395 12778122 Lja3g4067 3 80023007 80025454 ECH
Lja1g1238 1 12774395 12778122 Lja1g1238 1 12774395 12778122 ECH
Lja1g1238 1 12774395 12778122 Lja5g2283 5 40644587 40647979 PCT