Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1990 ATGGAAAACAGAACAGAGGGAAGTAAAGAAAGGATGGAATCAACCCATGTGATATCCATTTCGAATGGAGAAGAAAATATCGCTGCTAGGGAGAATGAAAAACCATTCCAATTTTCACTTACACTTCCTCCCATTTTCTGTCGCCTTAGAGAAAACAAAATCCTTCATTGTTCTCTTCTCAGGGACAAGCAAATTAAGCAAGACACTAAGAATATGATTCACAGTGTCAAGGTTGGGTTTTCCCTGGTATTGATTTCCCTTCTGTACCTCTTGGATCCTCTCTATGAGCAAGTTGGAGACAATGCAATGTGGGCCATCATGACTGTTATAGTCATCTTTGAATTCTCTGCAGGTGCTACACTAGGAAAAGGTTTAAATCGTGGAATGGGAACTATATTAGGAGGTGGACTTGGTTGCATAGCAGCAGTTTTGGCTCAGAACCTTGGTGTGGTTGGGGACTCAGTTATGATTGGTACTTCAGTATTTATTTTTGGGACGATTGGGACTTATATTCGATTGTTACCGAGCATTAAGAAGAGATATGATTATGGGGTGATGATTTTCATCTTGACATTCAACCTTGTGGTGGTGTCTGGTGTGCGCACTGATCAGAAAGTGTGGGAGATAGCACGTGATCGTCTTTTATCAATTGTGATGGGTTTCATTGTTTGCATTTGTGTGAGCTTGTTCGTTTTCCCCTTATGGGCTGGTGATGAACTTCATGGATCCACAGTCTCAAGATTCCAACACCTTGCAGACTCATTTCAAGGGTGCTTGGAGGAATATGTCATTGTCAAATCCTCTGATGAAAAAGAAACTAAGGCTGGTGCTGGTGCTCCTGCTAGCTTCTCTGTTTGCAAGTCATTGTTGAGCTCCAAGTCAAAGGATGAGTTGCTGGTAAATTTTGCAAAATGGGAACCCAGGCATGGAAAATTCGGGTTTTGCTACCCTTGGGAGAAATATCTAGAGATTGGAGACGTTCTTCAAGAATTGGCTGCTATTATTCTAGCTCTGGGAGGTTGCCTCCAAGCCTCAAAAAAGCCTATGTCATTGGCCTCTAAGAATGAAACAGCCCATTTGGAATCTTGTGAAGCAATTGGGTCACAGATCGTGTGGGCTCTGCGAGAACTTGAAGACAGCATGAAGCAAATGAGGAAGTATCAAACGGAGCCTCACATTTCATCTAAATTGAAATCAGCAAGACAAGATATAAGCTTGATGATTTCCACGGCCAAAATAGCAGCAGCACTTGAGAATATTGATGATGATAATGATGCACTTGCAACCGTGAGCTTCGCGTTCTTACTCAGGGAAGTGGTGGACAAAGTAGAGGAATTGACCAAAGTGGTGGATGAACTTGGAGACATTGCTGGCTTTCGTGCTCATTCAACTCAGTAA 1398 0.4242 MENRTEGSKERMESTHVISISNGEENIAARENEKPFQFSLTLPPIFCRLRENKILHCSLLRDKQIKQDTKNMIHSVKVGFSLVLISLLYLLDPLYEQVGDNAMWAIMTVIVIFEFSAGATLGKGLNRGMGTILGGGLGCIAAVLAQNLGVVGDSVMIGTSVFIFGTIGTYIRLLPSIKKRYDYGVMIFILTFNLVVVSGVRTDQKVWEIARDRLLSIVMGFIVCICVSLFVFPLWAGDELHGSTVSRFQHLADSFQGCLEEYVIVKSSDEKETKAGAGAPASFSVCKSLLSSKSKDELLVNFAKWEPRHGKFGFCYPWEKYLEIGDVLQELAAIILALGGCLQASKKPMSLASKNETAHLESCEAIGSQIVWALRELEDSMKQMRKYQTEPHISSKLKSARQDISLMISTAKIAAALENIDDDNDALATVSFAFLLREVVDKVEELTKVVDELGDIAGFRAHSTQ* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1990 465 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 15 460 - -
Lja5g1990 465 Pfam Aluminium activated malate transporter 66 451 IPR020966 GO:0015743
Lja5g1990 465 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 12-LIKE 15 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1990 Lja-Chr5 25860784 25864202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1990 66 410 Miscellaneous Gene Families AT4G17970 42.197 1.44e-89 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1990 - - gmx:100527892 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1990 5 25860784 25864202 Lja5g1990 5 25860784 25864202 ECH
Lja1g1140 1 11697964 11702165 Lja5g1990 5 25860784 25864202 PCT
Lja1g0638 1 5927528 5929743 Lja5g1990 5 25860784 25864202 PCT