Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1140 ATGGAATCAACTCATGTGATATCCATTAGCAATGAAGAAGACAGTGTTGTTCCTGTGAAGGAGGTAAAGACACTCCAATTTCTATTTAGGCAAAATAAAATCCACAGCTCTCCTGCCCCCATTACTACTTCTTATCCAAAGGATAATAAGCAGAAGAAAAGTGACCATAACATTAGGAAGATTATTCACAGTATCAAAGTTGGAATCTCCCTGGTTTTGGTTTCACTCTTGTACATTTTGAATCCTCTGTTTGAGCAAGTAGGAGAAAATGCTATGTGGGCTCTCATGACTGTAATTGTCATCTTTGAATTCTCTGCAGGTGCCACCTTAGGAAAGGGCTTCAACCGTGGAATAGGAACTGTTGTTGGAGGAGGACTTGGTTGCTTAGCAGCAATTTTGGCCCAATGCATTGGAGGGATTGGCAGCTCAATTATCATAGGAACTTCAGTATTTATCTTTGGATCGGTGGCTACATATTTTCGACTGGTTCCAAGCATCAAAAACAAATACGATTATGGAATGATGGTACTCATTCTCACTTTCAATCTAGTTGTGGTTTCTGGTGCACATCCTGGTTTGAAAGTGTGGGACATAGCCAGAGAACGTTTCTTGATAATCCTGATGGGTTTCATCGTGTGCATTTGTGTGAGCTTGTTCGTATTTCCCTTGTGGGCCAGTGATGAATTTCATGATTCCATTATCTCAAGATTCCATGACCTTGCCAATACAATTGAAGGTTGCTTAGAGGAATGTTGCAAAATGATTGATGAAAATGAAAATCAAGCCAGTGATGGCTTCTCAGTTTGCAAATCGGTGTTGAACTCCAAGTCAAAGGATGAATCATTGGCAAATTTTGCAAAATGGGAACCCTGGCATGGAAAATTTGGATTTTGCTACCCTTGGGAAAAGTACTTAAAGATTGGAGAGATTCTTCGAGAGTTAGCTGCGTTCATTCTTGCAGTGGGTCGTTGTCTCCAAGCCTCAAAACAGCCCACGGCATCTTTGAGGGAGTCAAATTTGGTCCAATTAGAACCATGTGAAGCAATTGGGTCAAGACTTGCTTGGACTCTTCGAGAACTCGGAGATAGCATGAAGCAAATGATGAAATGTGAAGCAGAGGCTGGAACTTTTTTGGCTAAGTTAAAAGTACTGAGAACAGAGCTAAGCTTGGTGATTTCAACGTCCATGGTAGCACAACTTGAGAATGAGGAAGTTCTAGCCATTGCAAGTTTAGTGTTTTTGCTTATGGAAGTGGTGGAGAAGGTAGAGGAATTGGTAAAAGAGGTGGTGGAACTTGGAGATATTGCTCGTTTTCGCAACCATGTAACTCCAGTTTCTTCCTAG 1344 0.4122 MESTHVISISNEEDSVVPVKEVKTLQFLFRQNKIHSSPAPITTSYPKDNKQKKSDHNIRKIIHSIKVGISLVLVSLLYILNPLFEQVGENAMWALMTVIVIFEFSAGATLGKGFNRGIGTVVGGGLGCLAAILAQCIGGIGSSIIIGTSVFIFGSVATYFRLVPSIKNKYDYGMMVLILTFNLVVVSGAHPGLKVWDIARERFLIILMGFIVCICVSLFVFPLWASDEFHDSIISRFHDLANTIEGCLEECCKMIDENENQASDGFSVCKSVLNSKSKDESLANFAKWEPWHGKFGFCYPWEKYLKIGEILRELAAFILAVGRCLQASKQPTASLRESNLVQLEPCEAIGSRLAWTLRELGDSMKQMMKCEAEAGTFLAKLKVLRTELSLVISTSMVAQLENEEVLAIASLVFLLMEVVEKVEELVKEVVELGDIARFRNHVTPVSS* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1140 447 Pfam Aluminium activated malate transporter 57 433 IPR020966 GO:0015743
Lja1g1140 447 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 12-LIKE 4 439 - -
Lja1g1140 447 PANTHER ALUMINUM-ACTIVATED MALATE TRANSPORTER 10 4 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1140 Lja-Chr1 11697964 11702165 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1140 59 405 Miscellaneous Gene Families AT5G46600 39.167 2.82e-84 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1140 - - gmx:100779890 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1140 1 11697964 11702165 Lja1g1140 1 11697964 11702165 ECH
Lja1g1140 1 11697964 11702165 Lja5g1990 5 25860784 25864202 PCT