Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g1142 ATGGACATGATCACAAGCATGGTGAGTGATAAACCTGCGGTGATATTTAGCAAGAGCAGCTGTTGCATGAGTCACTCCATCAAGTCACTGATACGTAGCATTGGGGCAAACCCCACTGTTTATGAGCTTGATCAAGTGGCAAATGGGAAGCAGATTGAGAGGGCTCTGCTTCAAATTGGATGCCAGCCAAGTGTTCCTGCTGTTTTTATAGGACAACAATTCATTGGTGGCTCTAAAACAATCATTAACTTGCATCTTCGGAATGAGTTAGCGCCACTGCTGAAGTAA 288 0.4444 MDMITSMVSDKPAVIFSKSSCCMSHSIKSLIRSIGANPTVYELDQVANGKQIERALLQIGCQPSVPAVFIGQQFIGGSKTIINLHLRNELAPLLK* 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g1142 95 TIGRFAM GlrX-like_plant: glutaredoxin-like family 5 95 IPR011905 -
Lja5g1142 95 Gene3D Glutaredoxin 2 95 - -
Lja5g1142 95 PANTHER GLUTAREDOXIN 1 94 IPR011905 -
Lja5g1142 95 Pfam Glutaredoxin 14 75 IPR002109 -
Lja5g1142 95 SUPERFAMILY Thioredoxin-like 1 95 IPR036249 -
Lja5g1142 95 CDD GRX_GRXh_1_2_like 12 93 - -
Lja5g1142 95 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Lja5g1142 95 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Lja5g1142 95 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Lja5g1142 95 PANTHER MONOTHIOL GLUTAREDOXIN-S2 PROTEIN 1 94 - -
Lja5g1142 95 ProSiteProfiles Glutaredoxin domain profile. 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g1142 Lja-Chr5 11505476 11505763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g1142 1 95 Miscellaneous Gene Families AT4G15700 54.737 2.96e-39 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g1142 K03676 - gmx:100789514 155.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g1142 5 11505476 11505763 Lja5g1142 5 11505476 11505763 ECH
Lja1g0337 1 2944244 2944510 Lja5g1142 5 11505476 11505763 PCT
Lja5g1142 5 11505476 11505763 Lja1g0338 1 2949133 2949450 PCT