Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g0337 ATGGACACAATCACAAGCATGGTAGCTGAGAAGCCTGTGGTGATATTCAGCAAGAGCACATGCTGCTTGTGCCACTCTGTGACATCACTGATACGTAACTTTGGAGCAAACCCAACAGTTCATGAGCTTGATACAATGGCAGAGGGGCAGCAGATTGAGGAAGCGTTGCTTCAAATGGGGTGCAGACCAAGTGTGCCAGCAGTGTTCATAGGACAACAATTCATAGGTGGCTCCAAGAAAATCATGAGCCTGCATGTCCGGAACTAA 267 0.4794 MDTITSMVAEKPVVIFSKSTCCLCHSVTSLIRNFGANPTVHELDTMAEGQQIEEALLQMGCRPSVPAVFIGQQFIGGSKKIMSLHVRN* 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g0337 88 PRINTS Glutaredoxin signature 72 85 IPR014025 -
Lja1g0337 88 PRINTS Glutaredoxin signature 58 71 IPR014025 -
Lja1g0337 88 PRINTS Glutaredoxin signature 13 31 IPR014025 -
Lja1g0337 88 SUPERFAMILY Thioredoxin-like 1 86 IPR036249 -
Lja1g0337 88 CDD GRX_GRXh_1_2_like 12 85 - -
Lja1g0337 88 Pfam Glutaredoxin 13 75 IPR002109 -
Lja1g0337 88 Gene3D Glutaredoxin 1 88 - -
Lja1g0337 88 TIGRFAM GlrX-like_plant: glutaredoxin-like family 5 87 IPR011905 -
Lja1g0337 88 ProSiteProfiles Glutaredoxin domain profile. 1 88 - -
Lja1g0337 88 PANTHER GLUTAREDOXIN 1 88 IPR011905 -
Lja1g0337 88 PANTHER MONOTHIOL GLUTAREDOXIN-S2 PROTEIN 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g0337 Lja-Chr1 2944244 2944510 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g0337 1 87 Miscellaneous Gene Families AT4G15690 50.575 1.23e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g0337 K03676 - gmx:100789514 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g0337 1 2944244 2944510 Lja5g1142 5 11505476 11505763 PCT
Lja5g1141 5 11503244 11503552 Lja1g0337 1 2944244 2944510 PCT